Sneha Bheemireddy

Communication pathway analysis within protein-nucleic acid complexes

The paper introduces ComPASS, a computational method to analyze communication networks in protein-nucleic acid complexes, revealing distinct signal transmission mechanisms across various systems.

Stoichiometric Insights into SARS-CoV-2 Spike-ACE2 Binding Across Variants

The paper uses molecular dynamics simulations to analyze Spike-ACE2 binding across SARS-CoV-2 variants, revealing conformational changes and variant-specific binding differences.

Structural conformations of intrinsically disordered proteins of podocyte slit-diaphragm

The paper investigates the structural dynamics of slit-diaphragm proteins using molecular docking and simulations, revealing conformational adaptations and subunit-sharing mechanisms in health and disease.

Computational analysis of the effect of a binding protein (RbpA) on the dynamics of Mycobacterium tuberculosis RNA polymerase assembly

This study uses computational methods to analyze how RbpA affects RNA polymerase assembly dynamics in Mycobacterium tuberculosis, identifying structural changes and potential ligands for drug development.

Sequestration of histidine kinases by non-cognate response regulators establishes a threshold level of stimulation for bacterial two-component signaling

The paper shows that non-cognate response regulators sequester phosphorylated histidine kinases, establishing a threshold for bacterial two-component signaling to prevent over-response to weak signals.