Elizabeth A. Fogarty

The paper shows Mi-2 and E93 coordinate cell cycle exit with terminal differentiation by decommissioning enhancers at key genes in Drosophila.

The paper identifies gene regulatory programs distinguishing naive CD8+ T cell subsets using RNA-seq and ATAC-seq data, revealing novel regulators and transcriptional networks.

This study shows enhancer decommissioning silences cell cycle genes in long-lived postmitotic Drosophila tissues and conserved principles in mammalian retina.

The paper identifies a novel regulatory pathway that represses transcripts with long 3'UTRs through accelerated RNA decay, independent of sequence elements or transcript length.

The paper introduces a tissue dissociation method optimized for ATAC-seq and CUT&RUN in Drosophila pupal tissues to study chromatin accessibility and histone modifications during metamorphosis.

This paper introduces CARP, a method combining RNA-seq and PRO-seq to distinguish direct miRNA targets from downstream regulatory changes, showing improved accuracy and reduced false positives.