Author

Hongya Zhu

Cornell UniversityORCID 0000-0003-1751-1782Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Andrew GrimsoniD· 2 shared Brian D. RuddiD· 2 shared Ya JiangiD· 2 shared Adrian J. McNairniD· 1 shared Cybelle TabilasiD· 1 shared Divya Ganapathi Sankaran· 1 shared Elizabeth A. FogartyiD· 1 shared Isabel M. ForlastroiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersGenomics

Andrew GrimsonORCID

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2 papers

Recent·Most cited

GenomicsCell ReportsPeer-reviewedJun 25, 2025

Gene Regulatory Programs that Specify Age-Related Differences during Thymocyte Development

Divya Ganapathi Sankaran, Hongya Zhu, Viviana I. Maymí…·Andrew Grimson

This study constructs a transcriptional and epigenetic atlas of T cell development in neonatal and adult mice, identifying age-related gene regulatory programs and a conserved regulator, Zbtb20.

2 citations

mousescRNA-seq

𝕏 PostBluesky

Systems BiologybioRxivPreprintNov 6, 2024

Deciphering gene regulatory programs underlying functionally divergent naive T cell subsets

Hongya Zhu, Ya Jiang, Adrian J. McNairn…·Andrew Grimson

The paper identifies gene regulatory programs distinguishing naive CD8+ T cell subsets using RNA-seq and ATAC-seq data, revealing novel regulators and transcriptional networks.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky