Author

Swarnabh Bhattacharya

Harvard UniversityORCID 0000-0003-0354-2350Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2

Frequent Co-Authors

Ramesh A. ShivdasaniiD· 3 shared Ruiyang HeiD· 3 shared Guodong Tie· 2 shared Onur EskiocakiD· 2 shared Pratik Narendra Pratap SinghiD· 2 shared Qiao ZhouiD· 2 shared Semir BeyaziD· 2 shared Wei GuiD· 2 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersCell Biology

Ramesh A. ShivdasaniORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Cell BiologybioRxivPreprintOct 26, 2026

A unique intestinal epithelial cell that expresses canonical lymphoid genes

Swarnabh Bhattacharya, Krithika Badarinath, Guodong Tie…·Ramesh A. Shivdasani

The paper identifies and characterizes a novel intestinal epithelial cell type that co-expresses epithelial and lymphoid genes, distinct from known cell types.

DOI 10.64898/2026.10.21.760658

mousehuman

𝕏 PostBluesky

Cell BiologyCell stem cellPeer-reviewedFeb 8, 2025

Niche-driven phenotypic plasticity and cis-regulatory dynamics of a revised model for intestinal secretory differentiation

Swarnabh Bhattacharya, Guodong Tie, Pratik Narendra Pratap Singh…·Ramesh A. Shivdasani

The paper shows that goblet and Paneth cells share similar gene expression and chromatin features, and their phenotypes are influenced by niche signals like BMP, suggesting a single cell type with plasticity.

16 citationstop 1%

mousehuman

𝕏 PostBluesky

Molecular BiologyCell stem cellPeer-reviewedMay 10, 2024

Transcription factor dynamics, oscillation, and functions in human enteroendocrine cell differentiation

Pratik Narendra Pratap Singh, Wei Gu, Shariq Madha…·Ramesh A. Shivdasani

This study investigates transcription factor dynamics during human enteroendocrine cell differentiation, finding that oscillations of ASCL1 and NEUROD1 enable accurate cell type diversification.

25 citations

humanbulk RNA-seq

𝕏 PostBluesky