Author

Ziwei Pan

The Jackson Laboratory for Genomic MedicineORCID 0000-0003-0533-1995Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:long-read sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:Drosophila· 1

Frequent Co-Authors

Sheng LiiD· 3 shared Yang LiuiD· 2 shared Albert W. ChengiD· 1 shared Aziz TaghbaloutiD· 1 shared Barbara G. MelloneiD· 1 shared Christina ChatzipantsiouiD· 1 shared Christopher E. MasoniD· 1 shared Emma Wade· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersBioinformatics

Sheng LiORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 29, 2025

NANOME: A Nextflow pipeline for haplotype-aware allele-specific consensus DNA methylation detection by nanopore long-read sequencing

Yang Liu, Hash Brown Taha, Qiuyang Zhang…·Sheng Li

NANOME improves DNA methylation detection using nanopore long-read sequencing by integrating multiple tools and enhancing precision and accuracy in human cell lines.

2 citations

humanlong-read sequencing

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Developmental BiologyNature CommunicationsPeer-reviewedJul 9, 2022

Interchromosomal interaction of homologous Stat92E alleles regulates transcriptional switch during stem-cell differentiation

Matthew Antel, Romir Raj, Madona Y. G. Masoud…·Mayu Inaba

The paper shows that changes in homologous chromosome pairing at the Stat92E locus are required for transcriptional downregulation during Drosophila stem cell differentiation.

18 citations

Drosophilaexperimental assay

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BioinformaticsGenome biologyPeer-reviewedOct 18, 2021

DNA methylation calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation

Yang Liu, Wojciech Rosikiewicz, Ziwei Pan…·Sheng Li

The paper evaluates DNA methylation calling tools for Oxford Nanopore sequencing using human data and provides an online database for comparing tool performance.

243 citationstop 1%

humanlong-read sequencing

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