Author

Katja Koeppen

Dartmouth CollegeORCID 0000-0003-1094-0621Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Bruce A. StantoniD· 3 shared Thomas H. HamptoniD· 3 shared Deborah A. HoganiD· 2 shared Samuel L. NeffiD· 2 shared Alexandra J. LeeiD· 1 shared Alix AshareiD· 1 shared Amanda B. Nymon· 1 shared Ambrose L. CheungiD· 1 shared

Activity by Year

2022-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersBioinformatics

Bruce A. StantonORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

ImmunologyArthritis & RheumatologyPeer-reviewedOct 17, 2024

Systemic Sclerosis dermal fibroblast exosomes trigger a Type 1 interferon response in keratinocytes through the TBK/JAK/STAT signalling axis

Jessica Bryon, Christopher W. Wasson, Katja Koeppen…·Francesco Del Galdo

24 citationstop 3%

humanbulk RNA-seq

𝕏 PostBluesky

MicrobiologyAmerican Journal of Physiology-Lung Cellular and Molecular PhysiologyPeer-reviewedMar 5, 2024

P. aeruginosa tRNA-fMet halves secreted in outer membrane vesicles suppress lung inflammation in Cystic Fibrosis

Zhongyou Li, Roxanna Barnaby, Amanda B. Nymon…·Bruce A. Stanton

This paper shows tobramycin reduces inflammation in cystic fibrosis by increasing 5' tRNA-fMet halves in P. aeruginosa outer membrane vesicles, which suppress IL-8 and neutrophilic inflammation in human cells and mice.

12 citations

𝕏 PostBluesky

BioinformaticsmSystemsPeer-reviewedNov 17, 2023

Rocket-miR, a Translational Launchpad for miRNA-based Antimicrobial Drug Development

Samuel L. Neff, Thomas H. Hampton, Katja Koeppen…·Bruce A. Stanton

Rocket-miR predicts human miRNA interactions with pathogens to identify potential antimicrobial candidates against antibiotic-resistant infections.

11 citations

humanbacteria (other)

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BioinformaticsScientific DataPeer-reviewedJun 16, 2022

CF-Seq, An Accessible Web Application for Rapid Re-Analysis of Cystic Fibrosis Pathogen RNA Sequencing Studies

Samuel L. Neff, Thomas H. Hampton, Charles T.S. Puerner…·Bruce A. Stanton

CF-Seq provides a web tool for re-analyzing CF pathogen RNA-seq data, enabling efficient filtering, visualization, and hypothesis generation across multiple studies.

12 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky