Author

Amanda J. Collier

Babraham InstituteORCID 0000-0003-1137-6874Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Organism:mouse· 1

Frequent Co-Authors

Peter J. Rugg‐GunniD· 2 shared Amander T. ClarkiD· 1 shared Anne E. CorcoraniD· 1 shared Bennett G. NovitchiD· 1 shared Christel KruegeriD· 1 shared Christophe HuretiD· 1 shared Claire RougeulleiD· 1 shared Csilla VárnaiiD· 1 shared

Activity by Year

2019-2019 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersGenomics

Peter J. Rugg‐GunnORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintDec 13, 2019

Network analysis of promoter interactions reveals the hierarchical differences in genome organisation between human pluripotent states

Peter Chovanec, Amanda J. Collier, Christel Krueger…·Peter J. Rugg‐Gunn

The paper analyzes promoter interactions in human pluripotent states to reveal hierarchical differences in genome organization using a network-graph approach.

1 citation

humanChIP-seq

𝕏 PostBluesky

Developmental BiologybioRxivPreprintDec 13, 2019

TGFβ superfamily signaling regulates the state of human stem cell pluripotency and competency to create telencephalic organoids

Momoko Watanabe, Jillian R. Haney, Neda Vishlaghi…·Bennett G. Novitch

This study shows that maintaining human pluripotent stem cells with feeders improves cortical organoid formation by activating TGFβ signaling and naive pluripotency genes, which can be mimicked with TGFβ growth factors.

8 citations

humanbulk RNA-seq

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Molecular BiologybioRxivPreprintJul 4, 2019

Mechanistic diversification of XIST regulatory network in mammals

Olga Rosspopoff, Christophe Huret, Amanda J. Collier…·Claire Rougeulle

The paper investigates the mechanistic differences in XIST regulatory networks between humans and mice, showing that JPX regulates XIST expression through distinct mechanisms in each species.

4 citations

humanmouse

𝕏 PostBluesky