Author

Shruti Bhagat

Karolinska InstitutetORCID 0000-0003-1403-1783Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Cell Biology· 1 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 3 Research Focus:differential expression· 3 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Assay:bulk RNA-seq· 2 Organism:human· 2 Organism:chicken / avian· 1 Research Focus:clustering· 1

Frequent Co-Authors

Yasuhiro MurakawaiD· 3 shared Ai Kanemaru· 2 shared Akifumi Takaori‐KondoiD· 2 shared Hideya KawajiiD· 2 shared Juha KereiD· 2 shared Shintaro KatayamaiD· 2 shared Yujiro Takegami· 2 shared Anastassius Damdimopoulos· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersCell Biology

Yasuhiro MurakawaORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Cell BiologyExperimental HematologyPeer-reviewedNov 1, 2025

Atlas of Cynomolgus Macaque Hematopoiesis

Shinichiro Oshima, Rahul Sinha, Kazuhiro Takeuchi…·Ryō Yamamoto

The paper develops a single-cell transcriptomic map of cynomolgus macaque hematopoietic stem cells and progenitors, revealing molecular differences from humans and a direct differentiation pathway to megakaryocyte lineages.

DOI 10.1016/j.exphem.2025.104974

chicken / avianscRNA-seq

𝕏 PostBluesky

Developmental BiologybioRxivPreprintFeb 13, 2020

DUX4 regulates oocyte to embryo transition in human

Sanna Vuoristo, Christel Hydén‐Granskog, Masahito Yoshihara…·Juha Kere

This study shows that DUX4 regulates the oocyte-to-embryo transition in humans by activating enhancers and promoting genome reprogramming.

11 citations

humanbulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintJul 3, 2019

Dynamics and Topology of Human Transcribed Cis-regulatory Elements

Shigeki Hirabayashi, Shruti Bhagat, Yu Matsuki…·Yasuhiro Murakawa

The paper develops NET-CAGE to detect nascent RNA 5-ends, identifies enhancer-promoter pairs, and reveals topological connections of cis-regulatory elements across cell types.

DOI 10.1101/689968

humanmouse

𝕏 PostBluesky