Author

Friederike Hanssen

Quantitative Biology CenterORCID 0009-0001-9875-5262Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Research Focus:software / tool· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Organism:E. coli· 1

Frequent Co-Authors

Sven NahnseniD· 4 shared Gisela GabernetiD· 3 shared Alexander PeltzeriD· 2 shared Edmund MilleriD· 2 shared Maxime Ulysse GarciaiD· 2 shared nf-core community· 2 shared Simon HeumosiD· 2 shared Alexey SokoloviD· 1 shared

Activity by Year

2024-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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4 shared papersBioinformatics

Sven NahnsenORCID

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Author profile →

4 papers

Recent·Most cited

Empowering bioinformatics communities with Nextflow and nf-core

Björn E. Langer, Andreia Neves do Amaral, Marie-Odile Baudement, Franziska Bonath, Mathieu Charles, Praveen Chitneedi, Emily L. Clark, Paolo Di Tommaso, Sarah Djebali, Philip Ewels, Sonia E Eynard, James A. Fellows Yates, Daniel Fischer, Evan W. Floden, Sylvain Foissac, , The Nf-Core Community

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

Genome biology · Jul 29, 2025Peer-reviewedBioinformatics

Cluster efficient pangenome graph construction with nf-core/pangenome

Simon Heumos, Michael Heuer, Friederike Hanssen, Lukas Heumos, Andrea Guarracino, Peter Heringer, Philipp Ehmele, Pjotr Prins, Erik P. Garrison, Sven Nahnsen

The paper introduces nf-core/pangenome, a scalable and reference-unbiased pipeline for constructing pangenome graphs, achieving faster performance than PGGB on large datasets.

Bioinformatics · Oct 10, 2024Peer-reviewedBioinformatics

nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework

Gisela Gabernet, Susanna Marquez, Robert D. Bjornson, Alexander Peltzer, Hailong Meng, Edel Aron, Noah Yann Lee, Cole G. Jensen, David Ladd, Mark Polster, Friederike Hanssen, Simon Heumos, nf-core community, Gur Yaari, Markus Christian Kowarik, , Steven H. Kleinstein

The paper introduces nf-core/airrflow, a Nextflow-based workflow for processing AIRR-seq data, validated on simulated and real datasets to analyze immune receptor repertoires.

PLoS Computational Biology · Jul 26, 2024Peer-reviewedBioinformatics

Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery

Friederike Hanssen, Maxime Ulysse Garcia, Lasse Folkersen, Anders Pedersen, Francesco Lescai, Susanne Jodoin, E. Miller, Matthias Seybold, Oskar Wacker, Nicholas H. Smith, nf-core community, Gisela Gabernet, Sven Nahnsen

The paper presents an optimized variant calling pipeline that reduces storage and runtime costs for DNA sequencing analysis.

NAR Genomics and Bioinformatics · Mar 23, 2024Peer-reviewedBioinformatics