Author

Shah A. Mohamed Bakhash

University of WashingtonORCID 0000-0003-3170-0862Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Approach:genetic perturbation / CRISPR· 1 Research Focus:genome assembly· 1 Assay:protein structure· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexander L. GreningeriD· 3 shared Lorenzo GiacaniiD· 2 shared Nicole A. P. LiebermaniD· 2 shared Andrés RabinovichiD· 1 shared Anna Berzkalns· 1 shared Annemiek Verwilligen· 1 shared Ariyaratne ManathungeiD· 1 shared Arlene C. SeñaiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersMicrobiology

Alexander L. GreningerORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintApr 3, 2026

Lineage-specific tprK diversification and Treponema pallidum transmission dynamics in Buenos Aires, Argentina

Nicole A. P. Lieberman, Luciana García, Shah A. Mohamed Bakhash…·Alexander L. Greninger

This study analyzes Treponema pallidum strains in Buenos Aires, Argentina, using whole genome sequencing and tprK locus analysis to understand transmission dynamics and lineage-specific diversity.

1 citation

humanwhole-genome sequencing

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GenomicsThe Journal of Infectious DiseasesPeer-reviewedSep 28, 2023

Genomic epidemiology of Treponema pallidum and circulation of strains with diminished tprK antigen variation capability in Seattle, 2021-2022

Nicole A. P. Lieberman, Carlos C Avendaño, Shah A. Mohamed Bakhash…·Alexander L. Greninger

The paper analyzes Treponema pallidum genomic data from Seattle to identify strain circulation and tprK antigen variation patterns in syphilis cases.

16 citations

whole-genome sequencingstatistical model

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Molecular BiologyPLoS PathogensPeer-reviewedMay 1, 2023

Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike

Xiaodi Yu, Jarek Juraszek, Lucy Rutten…·Johannes P. M. Langedijk

This study identifies two SARS-CoV-2 variants with NTD deletions that reshape the antigenic surface and reduce antibody binding, highlighting the plasticity of the NTD for immune escape.

15 citations

humanprotein structure

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