Akanksha Jain

The paper uses a multiplexed single-cell transcriptomic screen to study how morphogen cues affect regional specification in human neural organoids, finding that timing, concentration, and combination of morphogens strongly influence cell type and regional composition.

The paper uses live imaging and single-cell transcriptomics to study how extracellular matrix influences brain organoid development and regionalization.

The paper introduces CLIJ-assistant, a tool that enables interactive GPU-accelerated image processing and cross-platform code generation for bio-image analysis.

The paper uses lineage recording techniques to study brain regionalization in cerebral organoids, finding that iPSC clones accumulate in distinct brain regions and lineage restriction increases over time.

The paper shows that during insect gastrulation, regionalized tissue fluidization by an actomyosin cable enables epithelial gap closure through cell intercalation and tension release.

The paper shows that integrin-mediated adhesion between blastoderm and vitelline envelope provides counter-forces that shape gastrulation in insects.

This paper demonstrates how deep learning-based image restoration extends fluorescence microscopy's capabilities by improving resolution, reducing photon exposure, and increasing frame rates.