Robert Haase

Mastodon is a software platform for analyzing large-scale lineage-tracing microscopy datasets, enabling manual and automated cell tracking and lineage analysis in complex 3D geometries.

The paper quantifies mitotic spindle and chromosome segregation dynamics in C. elegans embryos, finding that spindle elongation scales with cell size while chromosome segregation remains invariant.

This paper introduces a new workflow for FLIM live-cell imaging using lifetime unmixing to distinguish fluorophores and demonstrates its application in tracking proteins and reducing autofluorescence in C. elegans.

This paper shows that using the Segment Anything Model (SAM) for zero-shot confluence estimation in mesenchymal stem cells is effective without needing extensive dataset curation or fine-tuning.

NanoPyx improves bioimage analysis speed using adaptive machine learning to optimize algorithm selection and execution.

The paper shows that nuclear shape changes and packing order during neurogenesis are critical for retinal lamination in zebrafish.

This study identifies and characterizes raphid diatom-specific myosins in Craspedostauros australis, showing that only CaMyoB-D moves during gliding, suggesting a role in force generation.

The paper introduces GAT, a tool for automated analysis of enteric neurons in gut tissue images, improving accuracy and throughput over manual methods.

This work benchmarks large language models for generating Python code in bio-image analysis, evaluating 18 models on 57 tasks with reference solutions and unit-tests.

Zebrafish embryos sequenced individually across ten developmental stages, paired with light-sheet lineage reconstruction, form an atlas and browser for in silico fate mapping.

LO_SCPLOWABKITC_SCPLOW is a Fiji plugin for efficient segmentation of big image data, supporting manual and automated routines on single- and multi-channel images and timelapse movies.

The paper introduces CLIJ-assistant, a tool that enables interactive GPU-accelerated image processing and cross-platform code generation for bio-image analysis.

The paper shows that during insect gastrulation, regionalized tissue fluidization by an actomyosin cable enables epithelial gap closure through cell intercalation and tension release.

CLIJ provides GPU-accelerated image processing through a Fiji plugin, enabling faster workflows on consumer hardware.