Author

Yuya Qiu

Université de LorraineORCID 0009-0003-7997-3162Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 3 Approach:mechanistic / dynamical model· 2 Assay:structural biology· 2 Approach:biophysical modeling· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:protein folding & dynamics· 1

Frequent Co-Authors

Emmanuelle BignoniD· 3 shared Roy González‐AlemániD· 2 shared Abigayle F. VitoiD· 1 shared Adam Ben ShemiD· 1 shared Bret FreudenthaliD· 1 shared Caleb S JacquesiD· 1 shared Carlos H. Trasviña‐ArenasiD· 1 shared Francisco-Javier Patino-LopeziD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersBiochemistry

Emmanuelle BignonORCID

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3 papers

Recent·Most cited

BiochemistryThe Journal of Physical Chemistry BPeer-reviewedSep 24, 2025

Specific binding modes of SIRT6 C-terminal domain to the nucleosome core particle influence DNA unwrapping and H3K27 accessibility

Yuya Qiu, Gábor Pápai, Adam Ben Shem, Emmanuelle Bignon

This study uses molecular dynamics simulations to investigate how the C-terminal domain of SIRT6 interacts with the nucleosome, influencing DNA unwrapping and H3K27 accessibility.

2 citations

humanstructural biology

𝕏 PostBluesky

BiochemistrybioRxivPreprintSep 2, 2025

Structure, dynamics, and processing of 8oxoG:A in the nucleosome

Abigayle F. Vito, Justin A. Ling, Julia C. Ferrara…·Bret Freudenthal

This study determines the structure and dynamics of 8oxoG:C and 8oxoG:A base pairs in the nucleosome and characterizes MUTYH activity, revealing that 8oxoG:A is less processable by MUTYH.

DOI 10.1101/2025.09.02.673820

structural biologyexperimental assay

𝕏 PostBluesky

BiophysicsbioRxivPreprintOct 7, 2024

Histone H3 cysteines as redox switches in the nucleosome: molecular modeling of S-sulfenylation and its structural consequences

Samuel Danladi Mador, Roy González‐Alemán, Yuya Qiu…·Emmanuelle Bignon

This study investigates how oxidation of histone H3 cysteines affects nucleosome structure using molecular modeling, revealing mechanisms and structural consequences of S-sulfenylation.

4 citations

mechanistic / dynamical modelchromatin & epigenetic regulation

𝕏 PostBluesky