Mara Lohde

This paper evaluates recent improvements in Oxford Nanopore sequencing for bacterial genomic surveillance, showing that new software tools significantly enhance accuracy and reproducibility.

This study uses Nanopore sequencing to analyze DNA methylation in four bacterial species, identifying species-specific and novel methylation motifs and improving basecalling accuracy for reliable methylation detection.

This study shows that repeated phage exposure to P. aeruginosa biofilms reduces phage efficacy due to genetic changes that confer resistance and tolerance.

This study evaluates Oxford Nanopore sequencing for outbreak tracing, identifies methylation-induced errors, and proposes a masking workflow to improve accuracy.