Pinpointing the tumor-specific T-cells via TCR clusters
M. Goncharov, E. A. Bryushkova, N. I. Sharayev, V. D. Skatova, A. M. Baryshnikova, G. V. Sharonov, I. V. Samoylenko, L. V. Demidov, D. M. Chudakov, E. O. Serebrovskaya
Abstract
Adoptive T cell transfer (ACT) is a promising approach to cancer immunotherapy, but its efficiency fundamentally depends on the extent of tumor-specific T-cell enrichment within the graft. This can be estimated via activation with identifiable neoantigens, tumor-associated antigens (TAAs), or living or lyzed tumor cells, but these approaches remain laborious, time-consuming, and functionally limited, hampering clinical development of ACT. Here, we demonstrate that homology cluster analysis of T cell receptor (TCR) repertoires efficiently identifies tumor-reactive TCRs allowing to: 1) detect their presence within the pool of tumor-infiltrating lymphocytes (TILs); 2) optimize TIL culturing conditions, with IL-2low/IL-21/anti-PD-1 combination showing increased efficiency; 3) investigate surface marker-based enrichment for tumor-targeting T cells in freshly-isolated TILs (enrichment confirmed for CD4+ and CD8+ PD-1+/CD39+ subsets), or re-stimulated TILs (informs on enrichment in 4-1BB-sorted cells). We believe that this approach to the rapid assessment of tumor-specific TCR enrichment should accelerate T cell therapy development.
02 /Specification & Classification
Click any tag to browse matching papersReproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- From prediction to engagement: defining tumor-reactive T cells through biological interaction
Nicholas P. Restifo, Suman Kumar Vodnala, … Denitsa Milanova·bioRxiv·Jun 3, 2026
- Tumor-versus-non-tumor T cell enrichment supported by single-cell and spatial phenotyping enables antigen-agnostic prioritization of candidate tumor-reactive TCRs
Volkhard Seitz, Jannik Franzen, … Sefer Elezkurtaj·bioRxiv·Sep 24, 2026
- Applications of T-cell receptor specificity annotation models for quality control and immunomonitoring in adoptive T-cell therapies
Max Van Houcke, Sander Wuyts, … Pieter Meysman·ImmunoInformaticsPeer-reviewed·May 20, 2026
- A new clustering approach identifies tumor-specific common TCRs with pan-cancer reactivity
Steffen Hennig, Kristin Gennermann, … R. Hammer·bioRxiv·Apr 26, 2025
- T-cell receptors identified by a personalized antigen-agnostic screening approach target shared neoantigen KRAS Q61H
Volker Lennerz, Christoph Doppler, … Steffen Hennig·Frontiers in ImmunologyPeer-reviewed·Mar 17, 2025
- Discovering tumor-reactive T-cell receptors through single-cell sequencing of tumor-infiltrating lymphocytes
E. Gottschalk, B. A. Aksoy, … J. Hammerbacher·bioRxiv·Nov 30, 2021