bioRxivNeurosciencePreprint
Panoptic vDISCO imaging reveals neuronal connectivity, remote trauma effects and meningeal vessels in intact transparent mice
Ruiyao CaiiD, Chenchen PaniD, Alireza Ghasemigharagoz, Mihail Ivilinov TodoroviD, Benjamín FörsteraiD, Shan ZhaoiD, Harsharan S. BhatiaiD, Leander Mrowka, Delphine TheodorouiD, Markus Rempfler, Anna L. R. XavieriD, Benjamin T. KressiD, Corinne BenakisiD, Arthur LiesziD, Bjoern H. MenzeiD, Martin KerschensteineriD, Maiken NedergaardiD, Ali ErtürkiD
Abstract
Analysis of entire transparent rodent bodies could provide holistic information on biological systems in health and disease. However, it has been challenging to reliably image and quantify signal from endogenously expressed fluorescent proteins in large cleared mouse bodies due to the low signal contrast. Here, we devised a pressure driven, nanobody based whole-body immunolabeling technology to enhance the signal of fluorescent proteins by up to two orders of magnitude. This allowed us to image subcellular details in transparent mouse bodies through bones and highly autofluorescent tissues, and perform quantifications. We visualized for the first-time whole-body neuronal connectivity of an entire adult mouse and discovered that brain trauma induces degeneration of peripheral axons. We also imaged meningeal lymphatic vessels and immune cells through the intact skull and vertebra in naive animals and trauma models. Thus, our new approach can provide an unbiased holistic view of biological events affecting the nervous system and the rest of the body.\n\n\n\nO_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=151 SRC=\"FIGDIR/small/374785_ufig1.gif\" ALT=\"Figure 1\">\nView larger version (62K):\norg.highwire.dtl.DTLVardef@8fad72org.highwire.dtl.DTLVardef@c41ed5org.highwire.dtl.DTLVardef@1c470eaorg.highwire.dtl.DTLVardef@1d144cb_HPS_FORMAT_FIGEXP M_FIG C_FIG Note: Manuscript videos are available at Supplementary material section of BioRxiv and at the following link http://vdisco.isd-muc.de/
- organism: mouse
- assay: imaging
- research focus: spatial domain detection
- research focus: cell-cell communication
- approach: experimental assay
- Citations
- 18
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Towards a Brighter Constellation: Multi-Organ Neuroimaging of Neural and Vascular Dynamics in the Spinal Cord and Brain
D. Celinskis, C. J. Black, … C. I. Moore·bioRxiv·Dec 25, 2023
- All-optical visualization of specific molecules in the ultrastructural context of brain tissue
Ons M’Saad, Allison Cairns, … Joerg Bewersdorf·Nature BiotechnologyPeer-reviewed·Nov 26, 2025
- Mapping of individual sensory nerve axons from digits to spinal cord with the Transparent Embedding Solvent System
Yating Yi, Youqi Li, … Hu Zhao·Cell ResearchPeer-reviewed·Jan 2, 2024
- High-speed mapping of whole-mouse peripheral nerves at subcellular resolution
Mei-Yu Shi, Yuchen Yao, … Guo‐Qiang Bi·CellPeer-reviewed·Jul 1, 2025
- Three-photon excited fluorescence microscopy enables imaging of blood flow, neural structure and inflammatory response deep into mouse spinal cord in vivo
Yu‐Ting Cheng, Kawasi M. Lett, … Chris B. Schaffer·bioRxiv·Apr 4, 2024
- Live longitudinal imaging of meningeal cerebrovascular injury and its sequelae in adult zebrafish
Aurora Kraus, Jean S. Prosper-Santiago, … Brant M. Weinstein·bioRxiv·Nov 14, 2025