Author

Markus Rempfler

Friedrich Miescher Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 2 Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:imaging· 2 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Alexander SmithiD· 1 shared Ali ErtürkiD· 1 shared Alireza Ghasemigharagoz· 1 shared Anna L. R. XavieriD· 1 shared Arthur LiesziD· 1 shared Bastian EichenbergeriD· 1 shared Benjamín FörsteraiD· 1 shared Benjamin T. KressiD· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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1 shared paperDevelopmental Biology

Alexander SmithORCID

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4 papers

Recent·Most cited

The Grainyhead/LSF transcription factor GRH-1 is rhythmically required for molting

Milou W.M. Meeuse, Yannick P. Hauser, Smita Nahar, Alexander Smith, Kathrin Braun, Chiara Azzi, Markus Rempfler, Helge Großhans

The paper identifies GRH-1 as a transcription factor essential for rhythmic molting in C. elegans, showing its role in gene regulation and cuticle formation.

The EMBO Journal · Jan 23, 2023Peer-reviewedDevelopmental Biology

deepBlink: Threshold-independent detection and localization of diffraction-limited spots

Bastian Eichenberger, Yinxiu Zhan, Markus Rempfler, Luca Giorgetti, Jeffrey Alan Chao

deepBlink is a neural network method for automatically detecting and localizing diffraction-limited spots, outperforming existing methods on six datasets.

Nucleic Acids Research · Jun 23, 2021Peer-reviewedBioinformatics

Cell fate coordinates mechano-osmotic forces in intestinal crypt morphogenesis

Qiutan Yang, Shi-Lei Xue, Chii Jou Chan, Markus Rempfler, Dario Vischi, Francisca G. Maurer, Takashi Hiiragi, Édouard Hannezo, Prisca Liberali

The paper shows how cell fate-specific changes in osmotic and actomyosin forces coordinate robust organoid morphogenesis through lumen volume reduction and mechanical tension.

Nature Cell Biology · Jun 21, 2021Peer-reviewedDevelopmental Biology

Panoptic vDISCO imaging reveals neuronal connectivity, remote trauma effects and meningeal vessels in intact transparent mice

Ruiyao Cai, Chenchen Pan, Alireza Ghasemigharagoz, Mihail Ivilinov Todorov, Benjamín Förstera, Shan Zhao, Harsharan S. Bhatia, Leander Mrowka, Delphine Theodorou, Markus Rempfler, Anna L. R. Xavier, Benjamin T. Kress, Corinne Benakis, Arthur Liesz, Bjoern H. Menze, , Ali Ertürk

The paper introduces a new imaging technique to enhance fluorescent signal in cleared mouse bodies, enabling whole-body visualization of neuronal connectivity and trauma effects.

bioRxiv · Jul 23, 2018 · PreprintNeuroscience