The multicellular incoherent feedforward loop motif generates spatial patterns
Marcos Rodríguez Regueira, Jesús Daza GarcíaiD, Alfonso Rodríguez‐PatóniD
Abstract
The multicellular incoherent feedforward loop (mIFFL) is an extension of the traditional intracellular IFFL gene motif where the interacting nodes no longer need to be genes inside the same cell but can be spatially distributed in different cells. We studied for the first time the spatial computing abilities of these mIFFL through in silico simulations done with individual-based models (run in Morpheus and GRO software). We observed that: 1) a genetic circuit working as a mIFFL can behaves as an edge detector of the border of an infection, and 2) a mIFFL can be the inner mechanism generating the complex 7 stripe pattern of eve in D. melanogaster embryogenesis. So, in this work, we show that multicellular IFFL architectures can produce spatial patterns and are a promising spatial computing motif that deserves to be incorporated into the toolbox of pattern generation and multicellular coordination mechanisms. This study opens several future lines of research: multi-agent IFFL applied in ecology as a tool to predict spatial position of interacting animals or in distributed robotics.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 3
- Organism
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Spatiotemporal control of gene expression boundaries using a feedforward loop
Prasad U. Bandodkar, Hadel Al Asafen, Gregory T. Reeves·Developmental DynamicsPeer-reviewed·Jan 11, 2020
- A novel reaction-diffusion architecture for engineering self-organized patterns in mammalian cells
Benjamin Swedlund, John J Danan, … Leonardo Morsut·bioRxiv·May 25, 2026
- Periodic spatial patterning with a single morphogen
Sheng Wang, Jordi García‐Ojalvo, Michael B. Elowitz·Cell SystemsPeer-reviewed·Nov 25, 2022
- Cellular dialogues that enable self-organization of dynamic spatial patterns
Yiteng Dang, Douwe A. J. Grundel, Hyun Youk·Cell SystemsPeer-reviewed·Jan 1, 2020
- Emergent Patterns from Probabilistic Generalisations of Lateral Activation and Inhibition
Lisa Willis, Alexandre Kabla·bioRxiv·Dec 15, 2015
- Cell-in-the-loop pattern formation with optogenetically emulated cell-to-cell signaling
Melinda Liu Perkins, Dirk Benzinger, … Mustafa Khammash·Nature CommunicationsPeer-reviewed·Mar 13, 2020