bioRxivBiochemistry
De novo Classification of Mouse B Cell Types using Surfaceome Proteotype Maps
M. van Oostrum, M. Mueller, F. Klein, R. Bruderer, H. Zhang, P. Pedrioli, L. Reiter, P. Tsapogas, A. Rolink, B. Wollscheid
Abstract
System-wide quantification of the cell surface proteotype and identification of extracellular glycosylation sites is challenging when sample is limiting. We miniaturized and automated the previously described Cell Surface Capture technology increasing sensitivity, reproducibility, and throughput. We used this technology, which we call autoCSC, to create population-specific surfaceome maps of developing mouse B cells and used targeted flow cytometry to uncover developmental cell subpopulations.
- organism: mouse
- assay: flow cytometry
- research focus: cell type annotation
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Cell-Type-Specific Surfaceome Profiling of 100-500 Isolated Cells using a Droplet-Based Magnetic Affinity Purification System
Amanda C. Lorentzian, Juliet M. Bartleson, … Ying Zhu·Nature CommunicationsPeer-reviewed·Sep 18, 2026
- High-Dimensional Immunophenotyping of Murine T-cell and B-cell Subsets
K. T. Mincham, J. D. Young, D. H. Strickland·bioRxiv·May 7, 2020
- An integrated multi-omic single cell atlas to redefine human B cell memory
D. R. Glass, A. G. Tsai, … S. C. Bendall·bioRxiv·Oct 13, 2019
- Improved T cell surfaceomics by depleting intracellularly labelled dead cells
Christofer Daniel Sánchez, Aswath Balakrishnan, … Haik Mkhikian·Molecular & Cellular ProteomicsPeer-reviewed·Dec 25, 2025
- Cell type-selective secretome profiling in vivo
W. Wei, N. M. Riley, … J. Z. Long·bioRxiv·Sep 18, 2020
- A capture assay to analyse immunoglobulin secretion at the single-cell level
Theresa H. Ward, Grégoire Y Altan-Bonnet·bioRxiv·Jan 8, 2026