bioRxivBioinformaticsPreprint
Comparative Temporal Transcriptomic Analysis of SOD1 Mutations in iPSC-Motor Neurons
Miaodan HuangiD, Ke ZhangiD, Yu FengiD, Qing CheniD, Yixia Ling, Pilong LiiD, Dajiang QiniD, Huanxing SuiD
Abstract
Mutations in the SOD1 gene are among the most significant genetic contributors to amyotrophic lateral sclerosis (ALS), with different variants linked to varying disease severity. To investigate the molecular mechanisms driving this variability, we conducted RNA sequencing on spinal motor neurons (MNs) differentiated from isogenic human induced pluripotent stem cell (iPSC) lines engineered via CRISPR/Cas9. These lines carried two representative SOD1 heterogenous mutations, D91A and G94A, and were analyzed at Days 10 and 20 of neuronal maturation stage to capture the temporal changes of gene expression. We aim to explore how these mutations affect MN function, identify distinct molecular pathways that may explain the variable severity of ALS, and investigate the role of translation and metabolic dysregulation in disease progression.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Integrated temporal profiling of iPSCs-derived motor neurons from ALS patients carrying C9orf72, FUS, TARDBP, and SOD1 mutations
Guoming Ma, Congcong Xia, … Wenyuan Wang·bioRxiv·Oct 15, 2024
- Mutations in SOD1 induce ALS-related phenotypes in 3D iPSC-derived motor neuron (MN) spheroids
María José Castellanos‐Montiel, Anna Kristina Franco-Flores, … Thomas M. Durcan·bioRxiv·Jan 28, 2025
- A streamlined CRISPR workflow to introduce mutations and generate isogenic iPSCs for modeling amyotrophic lateral sclerosis
Éric Deneault, Mathilde Chaineau, … Thomas M. Durcan·MethodsPeer-reviewed·Sep 6, 2021
- Early nuclear phenotypes and reactive transformation in human iPSC-derived astrocytes from ALS patients with SOD1 mutations
Vincent Soubannier, Mathilde Chaineau, … Stefano Stifani·bioRxiv·Oct 5, 2023
- Post-transcriptional remodelling is temporally deregulated during motor neurogenesis in human ALS models
Raphaëlle Luisier, Giulia E. Tyzack, … Rickie Patani·Nature CommunicationsPeer-reviewed·May 16, 2018
- iPSC Motor Neurons with Familial ALS Mutations Capture Gene Expression Changes in Postmortem Sporadic ALS Motor Neurons
Aaron Held, Michelle J. Adler, … Brian J. Wainger·bioRxiv·Oct 25, 2022