Optogenetic stimulation recruits cortical neurons in amorphology-dependent manner
David BerlingiD, Luca BaroniiD, Antoine ChaffioliD, Grégory GauvainiD, Serge A. PicaudiD, Ján AntolíkiD
Abstract
Single-photon optogenetic stimulation is a crucial tool in neuroscience, enabling precise, cell-type-specific modulation of neuronal circuits. Miniaturization of this technique in the form of fully implantable wide-field stimulator arrays enables interrogation of cortical circuits in long-term experiments and promises to enhance Brain-Machine Interfaces for restoring sensory and motor functions. However, for both basic science and clinical applications, it is essential that this technique achieves the precision needed for selective activation of sensory and motor representations at the single-column level. Yet studies report differing and sometimes conflicting neuronal responses within the stimulated cortical areas. While recurrent network mechanisms contribute to complex responses, here we demonstrate that complexity starts already at the level of neuronal morphology. Simulating optogenetic responses in detailed models of layer-2/3 and layer-5 pyramidal neurons, we accounted for realistic physiological dynamics across different stimulation intensities, including threshold, sustained, and depolarization-block responses. Our findings suggest that the spatial distribution of activated neurons from a single stimulator location at the cortical surface can be inhomogeneous and varies with stimulation intensity and neuronal morphology across layers, potentially explaining the observed response heterogeneity in earlier experiments. We found that activation spreads laterally up to several hundred micrometers from the light source due to neuronal morphology. To enhance precision, we explored two strategies: preferentially somatic expression of channelrhodopsin, which was effective only in layer-5 neurons, and narrowing the stimulating light beam, which improved precision in both layers. Our results indicate that, under the right optical setup, single-column precision of stimulation is achievable, and that optical enhancements to the stimulator may offer more significant precision improvements than genetic modifications targeting the soma.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 4
- FWCI
- 0.70
- Field percentile
- top 34%
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Efficient incorporation of dendrites into a large-scale cortical model reveals their surprising role in sharpening optogenetic responses
David Berling, Tibor Rózsa, … Ján Antolík·bioRxiv·Aug 29, 2025
- Spatiotemporal limits of optogenetic manipulations in cortical circuits
Nuo Li, Susu Chen, … Karel Svoboda·bioRxiv·May 21, 2019
- Optical resolution is not the limiting factor for spatial precision of two-photon optogenetic photostimulation
Robert M. Lees, Bruno Pichler, Adam M. Packer·bioRxiv·Jul 1, 2023
- All-Optical Mapping Reveals Distributed Suppression of Cortical Sensory Responses After Optogenetic Silencing
Manuel Ambrosone, Elena Montagni, … Anna Letizia Allegra Mascaro·Brain stimulationPeer-reviewed·Jul 8, 2025
- Selective Recruitment of Cortical Neurons by Electrical Stimulation
Maxim Komarov, Paola Malerba, … Maxim Bazhenov·PLoS Computational BiologyPeer-reviewed·Aug 26, 2019
- Mice detect and discriminate temporal patterns of mesoscale optogenetic cortical stimulation
Gabrielle Stephens, Nikolas A. Francis·bioRxiv·Sep 23, 2026