Breast Cancer ResearchCancer BiologyPeer-reviewed journal article
Hope for Others: Research Results from the University of Pittsburgh Rapid Autopsy Program for Breast Cancer
Alexander Chih-Chieh ChangiD, Marija BalićiD, Tanner L. Bartholow, Rohit BhargavaiD, Daniel D. BrowniD, Lauren Brown, Adam BrufskyiD, Ye CaoiD, Neil M. CarletoniD, Amanda M. ClarkiD, Morgan Cody, Kai DingiD, Christopher R. Deible, Ashuvinee ElangovaniD, Julia FoldiiD, Daniel L. GeisleriD, Christine HodgdoniD, Naomi Howard, Zheqi LiiD, Jie Bin Liu, Oscar F. Lopez‐NuneziD, Dixcy Jaba Sheeba John MaryiD, Olivia McGinniD, Lori Miller, Kanako Mori, , Steffi OesterreichiD
Abstract
Breast cancer affects 1/8 of women throughout their lifetimes, with over 90% of cancer deaths being caused by metastasis. However, metastasis poses unique challenges to research, as complex changes in the microenvironment in different metastatic sites and difficulty obtaining tissue for study hinder the ability to examine in depth the changes that occur during metastasis. Rapid autopsy programs thus fill a unique need in advancing metastasis research. Here, we describe our protocol and processes for establishing and improving the US-based Hope for OTHERS (Our Tissue Helping Enhance Research and Science) program for organ donation in metastatic breast cancer. As of August 2024, we consented 114 patients and performed 37 autopsies, from which we collected 551 unique metastatic frozen tumor samples, 1244 FFPE blocks, 90 longitudinal liquid biopsy samples and developed 14 patient-derived organoid and 8 patient-derived xenograft models. We report in-depth clinical and histopathological information and discuss extensive new research and novel findings in patient outcomes, metastatic phylogeny, and factors in successful living model development. Our results reveal key logistical and protocol improvements that are uniquely beneficial to certain programs based on identifiable features, such as working closely with patient advocates, methods to rescue RNA quality in cases where tissue quality may degrade due to time delays, as well as guidelines and future expansions of our program. Statement of SignificanceRapid autopsy programs are unique research settings with huge potential for studying metastatic cancer, however, they have complex research challenges. Our work provides a valuable resource in advancing this field of research.
- organism: human
- assay: clinical cohort / trial
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: experimental assay
- Citations
- 4
- FWCI
- 1.52
- Field percentile
- top 17%
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