bioRxivMolecular BiologyPreprint
Interleukin-13-mediated alterations in esophageal epithelial mitochondria contribute to tissue remodeling in eosinophilic esophagitis
Jazmyne L. JacksoniD, Reshu Saxena, Mary Grace MurrayiD, Anne Staub, Alena KlochkovaiD, Travis H. Bordner, Courtney Worrell, Annie D. FulleriD, John M. Crespo, Andres J. Klein–SzantoiD, John W. ElrodiD, Tatiana A. KarakashevaiD, Melanie A. RuffneriD, Amanda B. MuiriD, Kelly A. WhelaniD
Abstract
BackgroundThe significance of mitochondria in EoE pathobiology remains elusive. ObjectiveTo determine the impact of EoE inflammatory mediators upon mitochondrial biology in esophageal epithelium, the mechanisms mediating these effects, and their functional significance to EoE pathobiology. MethodsMitochondria were evaluated in human biopsies, MC903/Ovalbumin-induced murine EoE, and human esophageal keratinocytes. Esophageal keratinocytes were treated with EoE-relevant cytokines and JAK/STAT inhibitor ruxolitinib. To deplete mitochondria, 3D organoids generated from TFAMloxp/loxp mice were subjected ex vivo to Cre or siRNA against Transcription factor A, mitochondria (TFAM) was transfected into esophageal keratinocytes. Mitochondrial respiration, membrane potential, and superoxide levels were measured. ResultsWe find evidence of increased mitochondria in esophageal epithelium of patients with EoE and mice with EoE-like inflammation. In esophageal keratinocytes, IL-4 and IL-13 increase mitochondrial mass. IL-13 increases mitochondrial biogenesis in a JAK/STAT-dependent manner. In 3D organoids, IL-13 limits squamous cell differentiation (SCD), and this is blunted upon TFAM depletion. IL-13 decreases mitochondrial respiration and superoxide level, although mitochondria remain intact. IL-13-mediated suppression of superoxide was abrogated upon TFAM depletion in esophageal keratinocytes. ConclusionsWe report that increased mitochondrial mass is a feature of EoE. Among EoE-relevant cytokines, IL-13 is the primary driver of increased mitochondrial mass in esophageal keratinocytes by promoting mitochondrial biogenesis in a JAK/STAT-dependent manner. IL-13-mediated accumulation of mitochondria impairs SCD in esophageal keratinocytes and also suppresses oxidative stress, a factor that is known to induce SCD. These findings identify a novel mechanism through which IL-13 promotes EoE-associated epithelial remodeling. Clinical ImplicationThese findings further lay a foundation for exploration of level of esophageal epithelial mitochondria as a predictive biomarker for response to dupilumab. Capsule summaryIL-13 promotes mitochondrial biogenesis in esophageal epithelium, contributing to impaired squamous cell differentiation.
- organism: human
- organism: mouse
- assay: bulk RNA-seq
- research focus: cell type annotation
- research focus: differential expression
- approach: statistical model
- Citations
- 2
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Systemic Analysis of Patient Derived Esophageal Epithelial Organoid Model Reveals Cell State Heterogeneity and Conservation of Differentiation Hierarchy
Alyssa Baccarella, Yusen Zhou, … Melanie A. Ruffner·bioRxiv·Oct 30, 2026
- FOXM1 Modulation Alleviates Epithelial Remodeling and Inflammation in Eosinophilic Esophagitis
Masaru Sasaki, Joshua X. Wang, … Amanda B. Muir·bioRxiv·May 25, 2025
- NIX-associated mitochondrial remodeling contributes to esophageal epithelial differentiation
No’ad Shanas, Aissata Balde, … Kelly A. Whelan·bioRxiv·Sep 18, 2026
- Distinct roles for thymic stromal lymphopoietin (TSLP) and IL-33 in experimental eosinophilic esophagitis
Anish Dsilva, Ariel Wagner, … Ariel Munitz·AllergyPeer-reviewed·Jul 29, 2025
- Proton pump inhibitors modulate esophageal epithelial barrier function and crosstalk with eosinophils
Ravi Gautam, Megha Lal, … Melanie A. Ruffner·Pediatric Allergy and ImmunologyPeer-reviewed·Feb 27, 2026
- Aryl Hydrocarbon Receptor Suppresses Eosinophilic Esophagitis Responses through OVOL1 and SPINK7
N. P. Azouz, A. M. Klingler, … M. E. Rothenberg·bioRxiv·May 17, 2023