bioRxivDevelopmental BiologyPreprint
Acidic microenvironment shaped by lactate accumulation promotes pluripotency through multiple mechanisms
Wenting GuoiD, Shaohua WangiD, Xiaoshan ZhangiD, Ming Shi, Jing HaoiD, Xiwen WangiD, Kaili Gu, Feifei Duan, Ying YaniD, Xi Yang, Chao Zhang, Le‐Qi Liao, Yangming WangiD
Abstract
Enhanced glycolysis is a distinct feature associated with numerous stem cells and cancer cells. However, little is known about its regulatory roles in gene expression and cell fate determination. Here we show that acidic environment shaped by lactate accumulation promotes the self-renewal and pluripotency of both mouse and human embryonic stem cells (ESCs). Mechanistically, acidic pH reduces the tri-methylation of H3K27 globally at transcriptional start sites to partially prevent ESC differentiation. In addition, acidic pH stabilizes a large number of mRNAs including pluripotency genes. Furthermore, we found that AGO1 protein is downregulated at acidic conditions, leading to the de-repression of a subset of microRNA targets in low-pH treated ESCs. Altogether, our study provides insights into mechanisms whereby acidic microenvironment produced by enhanced glycolysis regulates gene expression to determine cell fate and has broad implications in the fields of regenerative medicine and cancer biology.
- organism: mouse
- organism: human
- assay: bulk RNA-seq
- assay: ChIP-seq
- assay: proteomics
- research focus: gene regulatory network inference
- research focus: differential expression
- research focus: cell type annotation
- approach: statistical model
- approach: experimental assay
- Citations
- 1
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Lactate Accelerates Mouse ES Cell Differentiation Towards the XEN Lineage
Mohamed I. Gatie, Tyler T. Cooper, … Gregory Mitchell Kelly·bioRxiv·Dec 14, 2020
- Aerobic glycolysis and lactate regulate histone H3K18Lactylation occupancy to fine-tune gene expression in developing and mature retina
Mohita Gaur, Xulong Liang, … Anand Swaroop·bioRxiv·Apr 17, 2025
- Acidic pH is a Metabolic Switch for 2‐Hydroxyglutarate Generation and Signaling
Sergiy M Nadtochiy, Xenia Schafer, … Paul S Brookes·bioRxiv·Jul 22, 2016
- Lactate promotes cardiomyocyte dedifferentiation through metabolic reprogramming
J. Ordono, S. Perez-Amodio, … E. Engel·bioRxiv·Jul 21, 2020
- Tumor microenvironment acidosis favors pancreatic cancer stem cell properties and in vivo metastasis
Michala G. Rolver, Juan Camacho Roda, … Stine F. Pedersen·iSciencePeer-reviewed·Feb 5, 2025
- Mouse Embryonic Stem Cell Pluripotency Factors Regulate RNA Methylation
Laura J. Sedivy, Gabrielle Brandt, … Christopher J. Phiel·bioRxiv·Feb 23, 2023