bioRxivCell Biology
Downregulation of E-cadherin in pluripotent stem cells triggers partial EMT
C. Aban, A. Lombardi, G. Neiman, M. C. Biani, A. La Greca, A. Waisman, L. N. Moro, G. E. Sevlever, S. G. Miriuka, C. Luzzani
Abstract
Epithelial to mesenchymal transition (EMT) is a critical cellular process that has been well characterized during embryonic development and cancer metastasis and it also is implicated in several physiological and pathological events including embryonic stem cell differentiation. During early stages of differentiation, human embryonic stem cells pass through EMT where deeper morphological, molecular and biochemical changes occur. Though initially considered as a decision between two states, EMT process is now regarded as a fluid transition where cells exist on a spectrum of intermediate states. In this work, using a CRISPR interference system in human embryonic stem cells, we describe a molecular characterization of the effects of downregulation of E-cadherin, one of the main initiation events of EMT, as a unique start signal. Our results suggest that the decrease and delocalization of E-cadherin causes an incomplete EMT where cells retain their undifferentiated state while expressing several characteristics of a mesenchymal-like pheno-type. Namely, we found that E-cadherin downregulation induces SNAI1 and SNAI2 upregulation, promotes MALAT1 and LINC-ROR downregulation, modulates the expression of tight junction occludin 1 and gap junction connexin 43, increases human embryonic stem cells migratory capacity and delocalize b-catenin. Altogether, we believe our results provide a useful tool to model the molecular events of an unstable intermediate state and further identify multiple layers of molecular changes that occur during partial EMT.
- organism: human
- assay: bulk RNA-seq
- research focus: cell type annotation
- research focus: differential expression
- research focus: cell signaling & trafficking
- approach: genetic perturbation / CRISPR
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Dependence of cell fate potential and cadherin switching on primitive streak coordinate during differentiation of human pluripotent stem cells
Ye Zhu, Aryeh Warmflash·bioRxiv·Jan 31, 2025
- Identification and characterization of intermediate states in mammalian neural crest cell epithelial to mesenchymal transition and delamination
Ruonan Zhao, Emma L. Moore, … Paul A. Trainor·eLifePeer-reviewed·Jun 14, 2024
- Mesenchymal-Epithelial Transition Regulates Initiation of Pluripotency Exit before Gastrulation
Sofiane Hamidi, Yukiko Nakaya, … Guojun Sheng·DevelopmentPeer-reviewed·Feb 1, 2020
- Global repression of mesenchymal genes in epithelial cells by the histone demethylase LSD1
Robert E Turnbull, Oksana Gonchar, … John WR Schwabe·bioRxiv·Nov 6, 2026
- Modulation of endometrial E-Cadherin and N-Cadherin by ovarian steroids and embryonic stimuli
Abhishek Tiwari, Nancy Ashary, … Deepak N. Modi·Tissue and CellPeer-reviewed·Oct 21, 2021
- Cell exit during EMT is mechanically triggered independently of E-Cadherin loss
Meritxell Font Noguera, Léa Roquin, … Magali Suzanne·bioRxiv·Aug 25, 2025