bioRxivNeurosciencePreprint
The brain-meningeal interface functions as a reservoir and entry site for brain parenchymal macrophages
Deniz KaymakiD, Phil T. Williams, Sabrina A. HoganiD, Marie‐Françoise RitziD, Giulia Di BartolomeiiD, Sihan Zhu, Siling DuiD, Hassan MelhemiD, Ana C. DelgadoiD, Tala ShekarianiD, Marta McDaid, Alexandra GerberiD, Igor SmirnoviD, Patrice ZeisiD, Timo SchenkeriD, Fiona GersteriD, Valerio SabatinoiD, Zora BaumanniD, Alexandar TzankoviD, Raphael G GuzmaniD, Luigi MarianiiD, Fiona K. DoetschiD, Jonathan KipnisiD, Rainer GlaßiD, Gregor HütteriD
Abstract
Microglia are regarded as self-maintaining brain parenchymal macrophages without contribution from adult hematopoiesis. Nevertheless, peripheral macrophage engraftment into the brain has been reported, but the biological variables governing central nervous system (CNS) macrophage niche access remain unclear. We show that CNS macrophage engraftment is determined by the balance between tissue-resident macrophage (TRM) self-renewal and the temporal alignment of niche opening with the availability of engraftment-competent cells and proximity to the vacated niche, rather than prolonged niche vacancy. Fate mapping revealed that monocytes entering the subdural space undergo border-associated macrophage (BAM)-like differentiation, clonal expansion, and transpial migration into the parenchyma, whereas mature BAMs directly repopulate selectively vacated parenchymal niches. We further identify a parenchymal macrophage population with a peripheral BAM-like transcriptional program in aged and neurodegenerative human brains, challenging the dogma of MG-exclusivity. Together, these findings establish a predictive framework for interpreting macrophage maintenance and replacement and for developing macrophage-based therapies.
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Brain-Engrafted Monocyte-derived Macrophages from Blood and Skull-Bone Marrow Exhibit Distinct Identities from Microglia
Siling Du, Feiya Ou, … Jonathan Kipnis·NeuronPeer-reviewed·Mar 11, 2026
- Border-associated macrophages transventricularly infiltrate the early embryonic cerebral wall to differentiate into microglia
Yuki Hattori, Daisuke Kato, … Takaki Miyata·bioRxiv·Jul 27, 2022
- Peripheral nerve resident macrophages are microglia-like cells with tissue-specific programming
P. L. Wang, A. K. Yim, … G. J. Randolph·bioRxiv·Dec 19, 2019
- Monocyte recruitment to the inflamed central nervous system: migration pathways and distinct functional polarization
D. Ivan, S. Walthert, G. Locatelli·bioRxiv·Apr 4, 2020
- Engrafted parenchymal brain macrophages differ from host microglia in transcriptome, epigenome and response to challenge
A. Shemer, J. Grozovski, … S. Jung·bioRxiv·Oct 27, 2018
- Young bone marrow-derived microglia-like cells improve cognitive function in the aged brain through BDNF-TrkB signalling
Lukasz Wlodarek, Ren‐Ke Li·bioRxiv·Oct 21, 2026