Sign in
Cell BiologyNature Communications
Peer-reviewed journal article

Viscoelastic Extracellular Matrix Enhances Epigenetic Remodeling and Cellular Plasticity

Yifan WuiD, Yang SongiD, Jennifer SotoiD, Tyler HoffmaniD, Xiao Yan LiniD, Aaron Zhang, Siyu CheniD, Ramzi N. MassadiD, Xiao HaniD, Dongping QiiD, Kun-Wei Yeh, Zhiwei FangiD, Joon H. EohiD, Luo GuiD, Amy C. RowatiD, Zhen GuiD, Song LiiD

Abstract

Extracellular matrices of living tissues exhibit viscoelastic properties, yet how these properties regulate chromatin and the epigenome remains unclear. Here, we show that viscoelastic substrates induce changes in nuclear architecture and epigenome, with more pronounced effects on softer surfaces. Fibroblasts on viscoelastic substrates display larger nuclei, lower chromatin compaction, and differential expression of distinct sets of genes related to the cytoskeleton and nuclear function compared to those on purely elastic surfaces. Slow-relaxing viscoelastic substrates reduce lamin A/C expression and enhance nuclear remodeling. These structural changes are accompanied by a global increase in euchromatin marks and local increase in chromatin accessibility at cis-regulatory elements associated with neuronal and pluripotent genes. Consequently, viscoelastic substrates improve the reprogramming efficiency from fibroblasts into neurons and induced pluripotent stem cells. Collectively, our findings unravel the roles of matrix viscoelasticity in epigenetic regulation and cell reprogramming, with implications for designing smart materials for cell fate engineering.

PDFDOI

02 /Specification & Classification

Click any tag to browse matching papers

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.