bioRxivNeurosciencePreprint
Reduced synaptic activity and dysregulated extracellular matrix pathways are common phenotypes in midbrain neurons derived from sporadic and mutation-associated Parkinson's disease patients
Shani SterniD, Shong LauiD, Andreea ManoleiD, Idan Rosh, Menahem Percia, Ran Ben EzeriD, Maxim Nikolaievich ShokhireviD, Fan Qiu, Simon T. SchaferiD, Abed AlFatah MansouriD, Tchelet Stern, Pola Ofer, Yam Stern, Ana Mendes Diniz, Lynne Randolph Moore, Ritu NayakiD, Aidan Aicher, Amanda J. RheeiD, Thomas L. WongiD, Thao H. NguyeniD, Sara B. LinkeriD, Beate WinneriD, Beatriz FreitasiD, Eugenia M. C. Jones, Cédric BardyiD, , Fred H. GageiD
Abstract
Several mutations that cause Parkinsons disease (PD) have been identified over the past decade. These account for 15-25% of PD cases; the rest of the cases are considered sporadic. Currently, it is accepted that PD is not a single monolithic disease but rather a constellation of diseases with some common phenotypes. While rodent models exist for some of the PD-causing mutations, research on the sporadic forms of PD is lagging due to a lack of cellular models. In our study, we differentiated PD patient-derived dopaminergic (DA) neurons from induced pluripotent stem cells (iPSCs) of several PD-causing mutations as well as from sporadic PD patients. Strikingly, we observed a common neurophysiological phenotype: Neurons derived from PD patients had a severe reduction in the rate of synaptic currents compared to those derived from healthy controls. While the relationship between mutations in genes such as the SNCA and LRRK2 and a reduction in synaptic transmission has been investigated before, here we show evidence that the pathogenesis of the synapses in neurons is a general phenotype in PD. Analysis of RNA sequencing results displayed changes in gene expression in different synaptic mechanisms as well as other affected pathways such as extracellular matrix-related pathways. Some of these dysregulated pathways are common to all PD patients (monogenic or idiopathic). Our data, therefore, shows changes that are central and convergent to PD and suggests a strong involvement of the tetra-partite synapse in PD pathophysiology.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- research focus: gene regulatory network inference
- research focus: cell type annotation
- approach: statistical model
- Citations
- 5
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