bioRxivImmunology
M1 Macrophage-Related Genes Model for NSCLC Immunotherapy Response Prediction
S. Wu, Q. Sheng, P. Liu, Z. Jiao, J. Lv, R. Qiao, D. Xie, Z. WangiD, J. Ge, P. Li, T. Wei, J. Lei, J. Fan, L. Wang
Abstract
2.Patients diagnosed with non-small cell lung cancer have a limited lifespan and exhibit poor immunotherapy outcomes. M1 macrophages have been found to be essential for anti-tumor immunity. This study aimed to develop an immunotherapy response evaluation model for NSCLC patients based on transcriptional expression. RNA sequencing profiles of 254 advanced-stage NSCLC patients treated with immunotherapy were downloaded from POPLAR and OAK projects. Immune cell infiltration in NSCLC patients has been examined, and thereafter different co-expressed genes were identified. Following that, the impact of M1 macrophage related genes on the prognosis of NSCLC patients was investigated. Six M1 macrophage co-expression genes, namely NKX2-1, CD8A, SFTA3, IL2RB, IDO1, and CXCL9, exhibited a strong association with the prognosis of NSCLC and served as effective predictors for immunotherapy response. A response model was constructed using Cox regression model and Lasso Cox regression analysis. The M1 genes were validated on our previous TD- FOREKNOW NSCLC clinical trial by RT-qPCR. The response model showed excellent immunotherapy response predicting and prognosis evaluating value in advanced stage of NSCLC. The model can effectively predict advanced NSCLC prognosis and aid in identifying patients who could benefit from customized immunotherapy as well as sensitive drugs.
- organism: human
- assay: bulk RNA-seq
- research focus: drug response / drug discovery
- research focus: protein structure prediction
- research focus: protein design
- research focus: benchmarking
- approach: statistical model
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