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363,000+ bioRxiv, medRxiv, and peer-reviewed papers across 26 biological disciplines.
Recent preprints
- BioinformaticsGigabytePeer-reviewedDOI 10.46471/gigabyte.195
- PhysiologyJournal of Experimental BiologyPeer-reviewed
Food Ration Affects mRNA Processing, Translation, Proteostasis, and Cytoskeletal Responses During Heat Shock in Mytilus californianus
Lars Tomanek, Frank Fabela, Melissa May
This study shows how food ration interacts with temperature to alter proteomic responses to heat stress in mussels, affecting mRNA processing, translation, and cytoskeletal stability.
1 citation - Cell BiologyeLifePeer-reviewed
Endosome-associated Rab GTPases control distinct aspects of neural circuit assembly
Katie X. Dong, Yanbo Zhang, Hui Ji…·Colleen N. McLaughlin
This study identifies the distinct roles of Rab5 and Rab11 in regulating neural circuit assembly through endosome-mediated trafficking.
DOI 10.7554/elife.109394.3 - Evolutionary BiologyPLoS BiologyPeer-reviewed
Interindividual vocal tract diversity influences the phonetic diversification of spoken languages
Steven Moran, Tiena Danner, Marcia S. Ponce de León, Christoph P. E. Zollikofer
The paper shows that vocal tract variation among individuals leads to consistent phonetic differences, suggesting a neutral-like evolutionary process in language sound development.
1 citationtop 2% - Molecular BiologyNucleic Acids ResearchPeer-reviewed
Exploring the bistable equilibrium of methylated CpG DNA recognition by the MBD2 protein
Senta Volkenandt, Julia Belyaeva, Torry Li…·Mahdi Bagherpoor Helabad
The paper uses molecular dynamics simulations and experimental assays to show MBD2 binds methylated CpG DNA with a bistable equilibrium, involving two stable conformations with different affinities.
DOI 10.1093/nar/gkag952 - Cell BiologyNucleic Acids ResearchPeer-reviewed
Sequence-Specific Targeting of GC-Rich Gene Loci by Parallel Triplex-Forming Oligonucleotides Containing a Modified Nucleobase
Ruolin Ma, Michael Brazzill, Dylan Justice…·David A. Rusling
This paper demonstrates that Z-modified TFOs can repress endogenous gene expression by forming stable triplexes at GC-rich regulatory elements.
DOI 10.1093/nar/gkag998 - GenomicsNucleic Acids ResearchPeer-reviewed
Integrative analysis reveals extensive interactions among C2H2 zinc finger proteins at chromatin loop anchors
Ernest Radovani, Syed Nabeel‐Shah, Edyta Marcon…·Jack F. Greenblatt
The paper identifies extensive interactions among C2H2 zinc finger proteins at chromatin loop anchors using ChIP-seq, interactome data, and chromatin interaction maps.
- MicrobiologymBioPeer-reviewed
Serotype-independent inhibition of S. pneumoniae by SMiTE, a commensal-derived bacteriocin
João Lança, Joana Bryton, João Borralho…·Raquel Sá‐Leão
The paper identifies SMiTE, a commensal-derived bacteriocin that effectively inhibits multiple Streptococcus pneumoniae serotypes without harming commensals.
DOI 10.1128/mbio.01703-26 - MicrobiologyApplied and Environmental MicrobiologyPeer-reviewed
Cobamide-based interactions between soil bacteria can be predicted based on monoculture growth
Zoila I. Alvarez-Aponte, Hazel I. Anagu, Kenny C. Mok…·Michiko E. Taga
The paper shows that cobamide concentrations predict microbial dominance in co-cultures, suggesting niche differentiation despite functional redundancy.
DOI 10.1128/aem.01300-26 - Cancer BiologyNeuro-OncologyPeer-reviewed
A Multi-Omic Phenobank Reveals Axes of Glioblastoma Growth, Invasion, and Therapeutic Vulnerability
Cecilia C. Krona, Soumi Kundu, Emil Rosén…·Sven Nelander
The paper establishes a multi-omic PDX resource linking GBM invasion phenotypes to molecular programs and therapeutic responses, identifying two invasion modes and a neurodevelopmental factor associated with tumor growth and survival.
1 citation - BiophysicsJournal of VirologyPeer-reviewed
Superinfection exclusion strategy of siphophage T5: analysis of the FhuA:Llp complex
Séraphine Degroux, Corinne Deniaud-Vives, Emeline Metsdach…·Cécile Breyton
The paper determines the structure of Llp and analyzes the FhuA:Llp complex to understand superinfection exclusion in bacteriophage T5.
DOI 10.1128/jvi.00909-26 - NeuroscienceeLifePeer-reviewed
Synaptic connectome of a neurosecretory network in the Drosophila brain
Theresa H. McKim, Jayati Gera, Ariana Julia B. Gayban…·Meet Zandawala
The paper characterizes the synaptic connectome of neurosecretory cells in Drosophila, revealing their regulatory roles in physiology and behavior through input and output pathways.
11 citationstop 2% - BiochemistryACS SensorsPeer-reviewed
Experimental Methods for CRISPR Enzyme Assays with Fluorescence Readout
Qi Jiang, Alexandre Sivassangarin Avaro, Hyunjun Bae…·Juan Gabriel Santiago
The paper presents a standardized experimental protocol and analysis framework for fluorescence-based CRISPR enzyme assays to improve reproducibility and consistency in kinetic measurements.
DOI 10.1021/acssensors.6c02175 - ImmunologyInfection and ImmunityPeer-reviewed
Host-secreted lactate during respiratory viral infection diminishes macrophage antibacterial activity through metabolic reprogramming
Sadia Sultana, Erin Walsh, Jennifer M. Bomberger
This study shows that host-secreted lactate from viral-infected airway epithelial cells reduces macrophage antibacterial activity by reprogramming their metabolism.
DOI 10.1128/iai.00409-26 - EcologyFrontiers of BiogeographyPeer-reviewed
Unraveling the inverse latitudinal gradient: Environmental and geographic influences on plant diversity in South American coastal lomas
Fiorella N. Gonzales, Holger Kreft, Luis P. Arapa, Dylan Craven
The paper investigates environmental and geographic factors influencing plant diversity in South American coastal lomas, finding an inverse latitudinal gradient shaped by climate, topography, and human impact.
DOI 10.21425/fob.19.142560 - BiophysicseLifePeer-reviewed✦ In-depth digest
Large scale prospective evaluation of co-folding across hundreds of Mac1-ligand complexes and three virtual screens
Jongbin Kim, G.J. Correy, Brendan W. Hall…·James S. Fraser
On 489 evaluable new Mac1 complexes, AlphaFold3, Chai-1 and Boltz-2 placed over half of ligands within 2 Å, but on docking hit-lists AF3 and Boltz-2 added little over docking.
7 citationstop 1% - BioengineeringAdvanced SciencePeer-reviewed
LigHTS: Massively Parallel Biomimetic Photo-Functionalization for Imaging-Based Ultra-High-Throughput Screening
Alessandro Enrico, Sara Rigolli, Julius Zimmermann…·Francesco S. Pasqualini
This paper introduces LigHTS, a method to create biomimetic hydrogels in standard microplates for high-throughput screening, enabling tunable thickness and topography with improved reproducibility.
DOI 10.1002/advs.78192 - BioinformaticsProteins Structure Function and BioinformaticsPeer-reviewed✦ In-depth digest
AlphaFold3 and Intrinsically Disordered Proteins: Reliable Monomer Prediction, Unpredictable Multimer Performance
Tuan Minh Dao, Sebastien Ghent, Vladimir Nikolaevich Uversky, Taseef Rahman
AlphaFold3 pLDDT matches AlphaFold2 at calling disordered residues (Matthews correlation 0.693 vs 0.701); on disorder-containing complexes mean DockQ is similar, but interface features explain less variance (42% vs 58%).
5 citationstop 2% - NeuroscienceeLifePeer-reviewed
Synaptic vesicle undocking induces low frequency depression
Melissa Silva, Federico Francisco Trigo, Isabel Llano, Alain Marty
The paper investigates low frequency depression (LFD) in synapses and finds it results from synaptic vesicle undocking rather than depletion of the readily releasable pool.
- NeuroscienceeLifePeer-reviewed
Robust and replicable effects of ageing on resting state brain electrophysiology measured with MEG.
Andrew J. Quinn, Jemma Pitt, Oliver Kohl…·Mark W. Woolrich
This paper estimates the full-frequency whole-head profile of age effects on resting-state MEG and shows the effect is replicable and robust across datasets and covariates.