Author

Aman Prasad

University of Wisconsin–Madison

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Assay:spatial transcriptomics· 2 Research Focus:batch correction / integration· 1 Organism:C. elegans· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:database / resource· 1 Organism:human· 1 Research Focus:metabolism & bioenergetics· 1

Frequent Co-Authors

Beth A. DroletiD· 2 shared Christina M. KendziorskiiD· 2 shared Lisa M. ArkiniD· 2 shared Aman NihaliD· 1 shared Bridget E. ShieldsiD· 1 shared C.A. BingmaniD· 1 shared Chitrasen MohantyiD· 1 shared David T. YangiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersBioinformatics

Beth A. DroletORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

The pyruvate branch point controls lymphoid cancer cell dissemination

Hamidullah Khan, Steven V John, Sushmita Roy, Mohd Farhan, Nguyet Minh Hoang, Patrick Buethe, Aman Prasad, Aman Nihal, David T. Yang, Lixin Rui, Jing Fan, Stefan M. Schieke

This study identifies the pyruvate branch point as a metabolic checkpoint controlling lymphoid cancer cell migration and dissemination via mROS/HIF-1a signaling.

bioRxiv · Mar 18, 2026 · PreprintCancer Biology

SpatialView: An interactive web application forvisualization of multiple samples in spatialtranscriptomics experiments

Chitrasen Mohanty, Aman Prasad, Lingxin Cheng, Lisa M. Arkin, Bridget E. Shields, Beth A. Drolet, Christina M. Kendziorski

SpatialView is an interactive web tool for visualizing multiple spatial transcriptomics experiments, enhancing data exploration and analysis.

Bioinformatics · Mar 1, 2024Peer-reviewedBioinformatics

SpotClean adjusts for spot swapping in spatial transcriptomics data

Zijian Ni, Aman Prasad, Shuyang Chen, Richard B. Halberg, Lisa M. Arkin, Beth A. Drolet, Michael A. Newton, Christina M. Kendziorski

SpotClean addresses spot swapping in spatial transcriptomics data to improve downstream analysis sensitivity and precision.

Nature Communications · May 27, 2022Peer-reviewedGenomics

An RNA binding polymer specifies nematode sperm fate

Scott Takeo Aoki, Douglas F. Porter, Aman Prasad, Marvin Wickens, C.A. Bingman, Judith E. Kimble

The paper identifies FOG-3 as a Tob/BTG protein that forms polymers to regulate sperm fate in nematodes through RNA binding.

Cell Reports · Jun 1, 2018Peer-reviewedDevelopmental Biology