The paper investigates how different chemical stressors induce prophage replication in Acinetobacter baumannii strains, revealing differential induction patterns across host backgrounds.

bioRxiv · Sep 17, 2026 · PreprintMicrobiology

Discovery, induction, and screening of prophages in clinical Acinetobacter baumannii isolates

Jessica Trinh, Vivek K. Mutalik, Catherine M. Mageeney

The paper identifies and characterizes prophages in A. baumannii isolates using computational analysis and experimental induction, showing their potential as therapeutic agents against antibiotic-resistant strains.

PHAGE · Jun 23, 2026Peer-reviewedMicrobiology

Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation under Ionic Liquid Stress

Deepanwita Banerjee, Thomas Eng, Yusuke Sasaki, Aparajitha Srinivasan, Asun M. Oka, Robin A. Herbert, Jessica Trinh, Vasanth R. Singan, Ning Sun, Daniel H. Putnam, Corinne D. Scown, Blake Alexander Simmons, Aindrila Mukhopadhyay

The paper resequences and analyzes transcriptomic changes in an engineered C. glutamicum strain under bioreactor conditions with and without ionic liquid stress.

Frontiers in Bioengineering and Biotechnology · Nov 18, 2021Peer-reviewedSystems Biology

High Throughput Fitness Profiling Reveals Loss Of GacS-GacA Regulation Improves Indigoidine Production In Pseudomonas putida

Thomas Eng, Deepanwita Banerjee, Andrew K. Lau, Emily C. Bowden, Robin A. Herbert, Jessica Trinh, Jan‐Philip Prahl, Adam M. Deutschbauer, Deepti Tanjore, Aindrila Mukhopadhyay

The paper identifies gene deletions that enhance indigoidine production in Pseudomonas putida using fitness profiling and bioreactor experiments.

Metabolic Engineering · May 6, 2021Peer-reviewedSystems Biology