Author

Bhargesh Indravadan Patel

Humboldt-Universität zu Berlin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Molecular Biology· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Assay:long-read sequencing· 2 Organism:yeast· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:biophysical modeling· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Ann E. Ehrenhofer‐MurrayiD· 3 shared Franziskus HauthiD· 2 shared Yu SuniD· 2 shared Brian D. GreeniD· 1 shared Christoph DieterichiD· 1 shared Claire FergusiD· 1 shared Colbie ReediD· 1 shared Erwina StojekiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersMolecular Biology

Ann E. Ehrenhofer‐MurrayORCID

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3 papers

Recent·Most cited

Evaluation of Dorado v5.2.0 de novo basecalling models for the detection of tRNA modifications using RNA004 chemistry

Bhargesh Indravadan Patel, Franziskus Hauth, Yu Sun, Ann E. Ehrenhofer‐Murray

This study evaluates Dorado v5.2.0 basecalling models for detecting tRNA modifications using RNA004 chemistry, finding improved pseudouridine detection but challenges in complex modification environments.

BMC Genomics · Jun 29, 2026Peer-reviewedMolecular Biology

MoDorado: Enhanced detection of tRNA modifications in nanopore sequencing by off-label use of modification callers

Franziskus Hauth, Wang Liu-Wei, Yu Sun, Bhargesh Indravadan Patel, Wiep van der Toorn, Michael Piechotta, Christoph Dieterich, Max von Kleist, Ann E. Ehrenhofer‐Murray

The paper introduces MoDorado, an algorithm that detects tRNA modifications beyond those trained in existing models, identifying seven new modifications in S. pombe.

Nucleic Acids Research · Aug 1, 2025Peer-reviewedMolecular Biology

The oncogene SLC35F2 is a high-specificity transporter for the micronutrients queuine and queuosine

Lyubomyr Burtnyak, Yifeng Yuan, Erwina Stojek, Xiaobei Pan, Lankani Gunaratne, Gabriel Silveira d’Almeida, Claire Fergus, Maria Martinelli, Colbie Reed, Jessie Fernandez, Bhargesh Indravadan Patel, Isaac Marquez, Ann E. Ehrenhofer‐Murray, Manal A. Swairjo, Juan D. Alfonzo, , Valérie de Crécy‐Lagard

This paper identifies SLC35F2 as a high-specificity transporter for queuine and queuosine in multiple species and shows its role in regulating intracellular levels of these micronutrients.

Proceedings of the National Academy of Sciences · Jun 17, 2025Peer-reviewedBiochemistry