Author

Elizaveta Bashkirova

Columbia University Irving Medical Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Genetics· 2 Genomics· 2 Developmental Biology· 1

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Approach:experimental assay· 5 Research Focus:gene regulatory network inference· 4 Assay:ChIP-seq· 3 Assay:Hi-C· 3 Organism:mouse· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2

Frequent Co-Authors

Stavros LomvardasiD· 4 shared Christine E. CampbelliD· 2 shared Gilad BarneaiD· 2 shared Ira SchiereniD· 2 shared Jason M. OsinskiiD· 2 shared Kevin MonahaniD· 2 shared Longzhi TaniD· 2 shared Richard M. GronostajskiiD· 2 shared

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2018-2026 · peak 2/yr

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4 shared papersGenomics

Stavros LomvardasORCID

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5 papers

Recent·Most cited

Generation of a transgenic cephalopod

Tessa G. Montague, Connor J. Gibbons, George Thomas Barlow, Elizaveta Bashkirova, Yilan Xu, Eva C. Castagna, Thomas J. Mungioli, Kelly A. Patrick, Adriana Nemes, Aalok Varma, Loren L. Looger, Caroline B. Albertin, Stavros Lomvardas, Richard Axel

This paper reports the generation of stable transgenic dwarf cuttlefish expressing fluorescent proteins using CRISPR and transposons, enabling live imaging of cell dynamics during embryonic development.

bioRxiv · Sep 28, 2026 · PreprintGenetics

Opposing, spatially-determined epigenetic forces impose restrictions on stochastic olfactory receptor choice

Elizaveta Bashkirova, Nell Klimpert, Kevin Monahan, Christine E. Campbell, Jason M. Osinski, Longzhi Tan, Ira Schieren, Ariel Pourmorady, Beka Stecky, Gilad Barnea, Xiaoliang Sunney Xie, Ishmail Abdus-Saboor, Benjamin Shykind, Bianca Jones Marlin, Richard M. Gronostajski, , Stavros Lomvardas

The paper shows that opposing epigenetic forces in olfactory progenitors spatially restrict stochastic OR choice through transcription and silencing influenced by NFIA, B, and X gradients.

eLife · May 12, 2023Peer-reviewedGenomics

Homeotic Regulation of Olfactory Receptor Choice via NFI-dependent Heterochromatic Silencing and Genomic Compartmentalization

Elizaveta Bashkirova, Kevin Monahan, Christine E. Campbell, Jason M. Osinski, Longzhi Tan, Ira Schieren, Gilad Barnea, X. Sunnie Xie, Richard M. Gronostajski, Stavros Lomvardas

The paper shows that zonal olfactory receptor expression in mice is regulated by chromatin structure, genome architecture, and NFIA/B/X gradients, with dorsal ORs being silenced in ventral zones.

bioRxiv · Aug 30, 2020 · PreprintDevelopmental Biology

Morphogen-Lineage Selector Interactions During Surface Epithelial Commitment

Sandra P. Melo, Jillian M. Pattison, Samantha N. Piekos, Jessica L. Torkelson, Elizaveta Bashkirova, Maxwell R. Mumbach, Charlotte Mary Rajasingh, Hanson Hui Zhen, Lingjie Li, Eric J. Liaw, Daniel Alber, Adam J. Rubin, Gautam Shankar, Howard Y. Chang, Paul A. Khavari, Anthony E. Oro

The paper investigates how morphogens and p63 interact to regulate chromatin dynamics during keratinocyte differentiation from hESCs, revealing p63's dependence on morphogenetic signaling for long-range chromatin interactions.

bioRxiv · Jun 16, 2018 · PreprintGenetics

Cell type-specific interchromosomal interactions as a mechanism for transcriptional diversity

A. Horta, K. Monahan, Elizaveta Bashkirova, Stavros Lomvardas

The paper identifies interchromosomal interactions in mouse olfactory sensory neurons that support stochastic gene expression during differentiation.

bioRxiv · Mar 23, 2018 · PreprintGenomics