Author

H. Hirakawa

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Assay:whole-genome sequencing· 5 Organism:plant (other)· 4 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:development & morphogenesis· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

K. Shirasawa· 4 shared S. Isobe· 3 shared A. Toyoda· 1 shared E. Fukai· 1 shared E. Toda· 1 shared H. Bono· 1 shared H. Nagasaki· 1 shared H. Tomita· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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4 shared papersPlant Biology

K. Shirasawa

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Establishing a comprehensive web-based analysis platform for Nicotiana benthamiana genome and transcriptome

K.-i. Kurotani, H. Hirakawa, K. Shirasawa, K. Tagiri, M. Mori, Y. Ichihashi, T. Suzuki, Y. Tanizawa, Y. Nakamura, S. Isobe, M. Notaguchi

The paper develops a web-based platform for analyzing Nicotiana benthamiana genome and transcriptome data, enabling gene expression visualization, phylogenetic analysis, and functional enrichment.

bioRxiv · Sep 3, 2023 · PreprintPlant Biology

Enterococcal linear plasmids adapt to Enterococcus faecium and spread within multidrug-resistant clades.

Y. Hashimoto, M. Suzuki, S. Kobayashi, Y. Hirahara, T. Nomura, J. Kurushima, H. Hirakawa, K. Tanimoto, H. Tomita

This study identifies enterococcal linear plasmids that spread AMR genes through horizontal transfer and contribute to multidrug resistance in Enterococcus faecium.

bioRxiv · Sep 7, 2022 · PreprintMicrobiology

A chromosome-level genome sequence of a model chrysanthemum: evolution and 1 reference for hexaploid cultivated chrysanthemum

M. Nakano, H. Hirakawa, E. Fukai, A. Toyoda, R. Kajitani, Y. Minakuchi, T. Itoh, Y. Higuchi, T. Kozuka, H. Bono, K. Shirasawa, I. Shiraiwa, K. Sumitomo, T. Hisamatsu, M. Shibata, , M. Kusaba

The paper presents a chromosome-level genome sequence of a diploid chrysanthemum, identifies recent retrotransposon activity, and demonstrates its utility for positional cloning and breeding.

bioRxiv · Jun 28, 2021Plant Biology

Whole-genome sequence analysis of mutations in rice plants regenerated from zygotes, mature embryos, and immature embryos

M. Ichikawa, N. Kato, E. Toda, M. Kashihara, Y. Ishida, Y. Hiei, S. Isobe, K. Shirasawa, H. Hirakawa, T. Okamoto, T. Komari

The paper analyzes whole-genome sequences of rice plants regenerated from different embryonic sources to assess somaclonal variation and mutation rates.

bioRxiv · Jan 20, 2021Plant Biology

The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants

T. Akagi, K. Shirasawa, H. Nagasaki, H. Hirakawa, R. Tao, L. Comai, I. M. Henry

The paper investigates the evolution of dioecy in persimmon by analyzing genome duplication events and gene function, revealing how gene duplication and adaptation contributed to the development of a sex determination system.

bioRxiv · May 5, 2019Evolutionary Biology