Author

Y. Tanizawa

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 4

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:whole-genome sequencing· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Y. Nakamura· 3 shared M. Sakamoto· 2 shared T. Mochizuki· 2 shared A. Braeutigam· 1 shared A. Meierhenrich· 1 shared A. Theron· 1 shared B. Laker· 1 shared C. Beaulieu· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersPlant Biology

Y. Nakamura

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Author profile →

4 papers

Recent·Most cited

The Marchantia pangenome reveals ancient mechanisms of plant adaptation to the environment

C. Beaulieu, C. Libourel, D.-L. Mbadinga Zamar, K. El Mahboubi, D. J. Hoey, J. Keller, C. Girou, H. San Clemente, I. Diop, E. Amblard, A. Theron, S. Cauet, N. Rodde, Z. Sabine, W. Halpape, , P.-M. Delaux

This study analyzes the pangenome of Marchantia polymorpha to identify genetic features involved in plant adaptation to terrestrial environments, finding shared and lineage-specific genes with flowering plants.

bioRxiv · Oct 27, 2023 · PreprintPlant Biology

Establishing a comprehensive web-based analysis platform for Nicotiana benthamiana genome and transcriptome

K.-i. Kurotani, H. Hirakawa, K. Shirasawa, K. Tagiri, M. Mori, Y. Ichihashi, T. Suzuki, Y. Tanizawa, Y. Nakamura, S. Isobe, M. Notaguchi

The paper develops a web-based platform for analyzing Nicotiana benthamiana genome and transcriptome data, enabling gene expression visualization, phylogenetic analysis, and functional enrichment.

bioRxiv · Sep 3, 2023 · PreprintPlant Biology

A highly contiguous genome assembly of red perilla (Perilla frutescens) domesticated in Japan

K. Tamura, M. Sakamoto, Y. Tanizawa, T. Mochizuki, S. Matsushita, Y. Kato, T. Ishikawa, K. Okuhara, Y. Nakamura, H. Bono

This paper presents a high-quality genome assembly of red perilla, identifying potential targets for genome editing to enhance metabolite production.

bioRxiv · Sep 16, 2022Plant Biology

MarpolBase Expression: A Web-based, Comprehensive Platform for Visualization and Analysis of Transcriptomes in the Liverwort Marchantia polymorpha

S. Kawamura, F. Romani, M. Yagura, T. Mochizuki, M. Sakamoto, S. Yamaoka, R. Nishihama, Y. Nakamura, K. T. Yamato, J. L. Bowman, T. Kohchi, Y. Tanizawa

The paper introduces MBEX, a web-based platform for analyzing and visualizing transcriptomes in Marchantia polymorpha, demonstrating its utility through oil body biogenesis analysis.

bioRxiv · Jun 3, 2022Plant Biology