H. Bono

Transcriptional Signatures of Domestication Revealed by Me-ta-Analysis of Pig, Chicken, Wild Boar, and Red Junglefowl Gene Expression Data

The paper identifies gene expression changes associated with domestication by comparing pigs, chickens, wild boars, and red junglefowl using RNA-seq data and meta-analysis.

Triterpene RDF: Developing a database of plant enzymes and transcription factors involved in triterpene biosynthesis using the Resource Description Framework

The paper develops Triterpene RDF, a manually curated database of plant enzymes and transcription factors involved in triterpene biosynthesis, to improve functional annotation of genomes and transcriptomes.

Meta-analysis of gonadal transcriptome provides novel insights into sex change mechanism across protogynous fishes

The paper performs a meta-analysis of gonadal transcriptomes across seven protogynous fish species to identify shared regulatory factors in sex change, finding novel genes and highlighting cholesterol dynamics as a potential universal influence.

Meta-Analysis of Public RNA Sequencing Data of Abscisic Acid-Related Abiotic Stresses in Arabidopsis thaliana

This study performs a meta-analysis of RNA-Seq data from Arabidopsis thaliana under ABA-related abiotic stresses to identify novel stress-responsive genes.

Meta-analysis of public RNA sequencing data revealed potential key genes associated with reproductive division of labor in social Hymenoptera and termites

The paper performs a meta-analysis of RNA-seq data from eusocial insects to identify genes associated with reproductive division of labor, finding 20 differentially expressed genes, 12 of which are novel.

A highly contiguous genome assembly of red perilla (Perilla frutescens) domesticated in Japan

This paper presents a high-quality genome assembly of red perilla, identifying potential targets for genome editing to enhance metabolite production.

Meta-analysis of RNA Sequencing Data of Arabidopsis and Rice under Hypoxia

This study performs a meta-analysis of RNA-Seq data from Arabidopsis and rice under hypoxia, identifying 40 upregulated and 19 downregulated genes common to both species.

Resistance to chemical carcinogenesis induction via a dampened inflammatory response in naked mole-rats

This study shows naked mole-rats (NMRs) resist chemical carcinogenesis through reduced inflammatory responses linked to necroptosis deficiency.

Neurosecretory protein GL-induced fat accumulation is accompanied by repressing the immune-inflammatory response in the adipose tissue of mice

This study shows that short-term NPGL overexpression in mice increases fat accumulation and suppresses immune-inflammatory responses in adipose tissue.

A chromosome-level genome sequence of a model chrysanthemum: evolution and 1 reference for hexaploid cultivated chrysanthemum

The paper presents a chromosome-level genome sequence of a diploid chrysanthemum, identifies recent retrotransposon activity, and demonstrates its utility for positional cloning and breeding.

Senescent cell death as an aging resistance mechanism in naked mole-rat

This study identifies senescent cell death as a mechanism contributing to the aging resistance in naked mole-rats, linking low antioxidant defense with suppressed senescent cell accumulation.

Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution

This study compares full-length and short-read 16S rRNA gene sequencing using MinION and conventional methods to assess species-level resolution in human gut microbiota.

Characterization of brown adipose tissue thermogenesis in the naked mole-rat (Heterocephalus glaber), a poikilothermic mammal

This study investigates brown adipose tissue thermogenesis in naked mole-rats, showing ADRB3-dependent thermogenic activity and its role in thermoregulation in non-cold environments.

Cancerous phenotypes associated with hypoxia-inducible factors are not influenced by the volatile anesthetic isoflurane in renal cell carcinoma

This study examines whether isoflurane affects cancer cell phenotypes linked to hypoxia-inducible factors in renal cell carcinoma, finding no positive influence of isoflurane on these traits.