Author

J. L. Parish

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 3 Cancer Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Organism:human· 4 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:ATAC-seq· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

J. Ferguson· 3 shared I. Pentland· 2 shared J. A. McKeating· 2 shared J. M. Harris· 2 shared A. Beggs· 1 shared A. Claydon· 1 shared A. Magri· 1 shared B. Noyvert· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

J. Ferguson

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

CTCF regulates hepatitis B virus cccDNA chromatin topology

M. O. Dobrica, C. S. Varghese, J. M. Harris, J. Ferguson, A. Magri, R. Arnold, C. Varnai, J. L. Parish, J. A. McKeating

This study shows that CTCF regulates HBV cccDNA chromatin topology and nucleosomal positioning, affecting viral transcription.

bioRxiv · Sep 6, 2023Microbiology

The chromatin insulator CTCF regulates HPV18 transcript splicing and differentiation-dependent late gene expression

J. Ferguson, K. Campos-Leon, I. Pentland, J. D. Stockton, T. Günther, A. Beggs, S. Roberts, B. Noyvert, J. L. Parish

This paper shows CTCF regulates HPV18 transcript splicing and late gene expression during differentiation by controlling chromatin looping and splice site usage.

bioRxiv · Apr 30, 2021Microbiology

CTCF association with episomal HPV16 genomes regulates viral oncogene transcription and splicing

I. J. Groves, G. Tang, I. Pentland, J. L. Parish, N. Coleman

This study shows CTCF binds to HPV16 episomes, regulating oncogene transcription and splicing during viral lifecycle, with CTCF playing a greater role than SMC1A in viral gene expression and genome maintenance.

bioRxiv · Feb 18, 2021 · PreprintCancer Biology

The CCCTC-binding factor CTCF represses hepatitis B virus Enhancer I and regulates viral transcription

V. D'Arienzo, J. Ferguson, G. Giraud, F. Chapus, J. M. Harris, P. A. Wing, A. Claydon, S. Begum, X. Zhuang, P. Balfe, B. Testoni, J. A. McKeating, J. L. Parish

This study identifies CTCF as a repressor of HBV transcription by binding to Enhancer I and reducing pre-genomic RNA levels.

Cellular Microbiology · Oct 16, 2020Peer-reviewedMicrobiology