Author

J.-B. Sibarita

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 4 Cell Biology· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 4 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Approach:microscopy & imaging analysis· 2 Approach:benchmark study· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:clustering· 1

Frequent Co-Authors

D. Sage· 2 shared R. Galland· 2 shared V. Viasnoff· 2 shared A. Agrawal· 1 shared A. Archetti· 1 shared A. Beghin· 1 shared A. Herbert· 1 shared A. Wheeler· 1 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersBiophysics

D. Sage

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Author profile →

5 papers

Recent·Most cited

Selective volumetric excitation and imaging for single molecule localization microscopy in multicellular systems

T. Galgani, Y. Fedala, R. Zapata, L. Caccianini, V. Viasnoff, J.-B. Sibarita, R. Galland, B. HAJJ

This paper introduces a method for volumetric excitation and 4D imaging of single molecules in multicellular systems using light sheet and multifocus microscopy.

bioRxiv · Dec 2, 2022 · PreprintBiophysics

A framework for evaluating the performance of SMLM cluster analysis algorithms

D. J. Nieves, J. A. Pike, F. Levet, J. Griffie, D. Sage, E. A. K. Cohen, J.-B. Sibarita, M. Heilemann, D. M. Owen

The paper evaluates SMLM cluster analysis algorithms using ARI and IoU metrics across simulated scenarios to establish a standard framework for future algorithm development.

bioRxiv · Jun 19, 2021Biophysics

High content 3D imaging method for quantitative characterization of organoid development and phenotype.

A. Beghin, G. Grenci, H. Rajendiran, T. Delaire, S. B. M. Raffi, D. Blanc, R. De Mets, H. T. Ong, V. Acharya, G. Sahni, V. Racine, R. Galland, J.-B. Sibarita, V. Viasnoff

The paper introduces a high-content 3D imaging platform for organoid development analysis, enabling automated, high-throughput imaging and AI-based quantification of morphological features across multiple scales.

bioRxiv · Mar 26, 2021 · PreprintBiophysics

Molecular motion and tridimensional nanoscale localization of kindlin control integrin activation in focal adhesions

T. Orre, Z. Karatas, B. Kastberger, C. Cabriel, R. T. Boettcher, S. Leveque-Fort, J.-B. Sibarita, R. Faessler, B. Wehrle-Haller, O. Rossier, G. Giannone

The paper shows kindlin uses membrane diffusion and localization to the integrin nano-layer to activate integrins in focal adhesions, distinct from talin's mechanism.

bioRxiv · Aug 6, 2020Cell Biology

Super-resolution fight club: A broad assessment of 2D & 3D single-molecule localization microscopy software

D. Sage, T.-A. Pham, H. Babcock, T. Lukes, T. Pengo, J. Chao, R. Velmurugan, A. Herbert, A. Agrawal, S. Colabrese, A. Wheeler, A. Archetti, B. Rieger, R. Ober, G. M. Hagen, , S. Holden

The paper evaluates 36 single-molecule localization microscopy software packages using simulated datasets to assess their performance in 2D and 3D imaging.

bioRxiv · Dec 1, 2018Biophysics