Author

James Morgan

Royal College of Surgeons in IrelandPrimary ORCID profile (0000-0003-2817-5032 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

James MorganiD1 paper · Cincinnati Children's Hospital Medical Center

Biology Disciplines

Click to filter author papers

Neuroscience· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:imaging· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

Adam DiakiteiD· 1 shared Adnan TufailiD· 1 shared Alberto ParrasiD· 1 shared Alexander Clifford DayiD· 1 shared Alexander Doney· 1 shared Alicja R. RudnickaiD· 1 shared Alison J. HardcastleiD· 1 shared Ananth C. ViswanathaniD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenetic & Genomic Medicine

Adam DiakiteORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

SynThIA: A semi-automated tool for quantification of multi-partite synapses

Max Neather, James Morgan, Fong Kuan Wong

SynThIA is a semi-automated tool for quantifying multi-partite synapses using up to four markers, offering high-throughput and accurate analysis.

bioRxiv · Mar 25, 2026 · PreprintNeuroscience

Autoencoder-based phenotyping of ophthalmic images highlights genetic loci influencing retinal morphology and provides epidemiologically informative biomarkers.

Panagiotis I. Sergouniotis, Adam Diakite, Kumar Gaurav, Naomi Allen, Tariq Mehmood Aslam, Denize Atan, Sarah Ann Barman, Jenny Barrett, Paul Bishop, Graeme Charles M. Black, Tasanee Braithwaite, Roxana Carare, Usha Chakravarthy, Michelle P. Y. Chan, Sharon Y. L. Chua, , Tomas Fitzgerald

The paper uses an autoencoder to derive retinal phenotypes from OCT images, identifies 118 genetic loci, and shows their relevance to retinal morphology and disease prediction.

Bioinformatics · Dec 5, 2024Peer-reviewedGenetic & Genomic Medicine

Large-scale changes to mRNA polyadenylation in temporal lobe epilepsy

Alberto Parras, Laura de Diego-García, Mariana Alves, Edward H. Beamer, Giorgia Conte, James Morgan, Ivana Ollà, Yasmina Hernandez-Santana, Norman Delanty, Michael A. Farrell, Donncha F. O’Brien, David Clifford Henshall, Raúl Méndez, José J. Lucas, Tobías Engel

This study identifies widespread changes in mRNA polyadenylation in temporal lobe epilepsy, highlighting the role of CPEB4 in seizure severity and neurodegeneration.

bioRxiv · Aug 8, 2019 · PreprintNeuroscience