Author

Jessica Way

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:database / resource· 1 Research Focus:eQTL / molecular QTL mapping· 1

Frequent Co-Authors

Amanda B KuzmaiD· 2 shared Beth A. DombroskiiD· 2 shared Elizabeth A. KiernaniD· 2 shared Gerard D. SchellenbergiD· 2 shared Li‐San WangiD· 2 shared Yuk Yee LeungiD· 2 shared Alexandre Amlie‐WolfiD· 1 shared Allison J. Scanlon· 1 shared

Activity by Year

2019-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenetics

Amanda B KuzmaORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

The Neuroscience Multi-Omic Archive: A BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain

Seth A. Ament, Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree, Heather H. Creasy, Kylee Degatano, Victor Felix, Peter Gandt, Gwenn A. Garden, Michelle Gwinn Giglio, Brian R. Herb, Farzaneh Khajouei, Elizabeth A. Kiernan, , Owen R. White

The paper describes the Neuroscience Multi-Omic Archive, a repository for single-cell transcriptomic and epigenomic data from mammalian brains, providing tools for data access and analysis.

Nucleic Acids Research · Nov 1, 2022Peer-reviewedGenomics

A comparative study of structural variant calling strategies using the Alzheimer's Disease Sequencing Project's whole genome family data

John Stephen Malamon, John J. Farrell, Li Charlie Xia, Beth A. Dombroski, Wan‐Ping Lee, Gautami Das, Badri Narayan Vardarajan, Jessica Way, Amanda B Kuzma, Otto Valladares, Yuk Yee Leung, Allison J. Scanlon, Irving Barrera, Jack Brehony, Kim C. Worley, , Gerard D. Schellenberg

The paper evaluates deletion calling accuracy using two pipelines on ADSP whole genome family data, finding Scalpel better for small deletions and Parliament for larger ones, with 78.1% of predicted deletions validated by Sanger sequencing.

bioRxiv · May 19, 2022 · PreprintGenetics

Deploying genomics workflows on high performance computing (HPC) platforms: storage, memory, and compute considerations

Marissa E. Powers, Keith Mannthey, Priyanka Sebastian, Snehal Adsule, Elizabeth A. Kiernan, Jonathan T. Smith, Jessica Way, Beri Shifaw, David Roazen, Paolo Narvaez

This paper provides infrastructure recommendations for optimizing genomics workflows on HPC platforms through benchmarking and profiling.

bioRxiv · Apr 5, 2022 · PreprintBioinformatics

Inferring the molecular mechanisms of noncoding Alzheimer’s disease-associated genetic variants

Alexandre Amlie‐Wolf, Mitchell Tang, Jessica Way, Beth A. Dombroski, Jiang Ming, Nicholas Vrettos, Yi‐Fan Chou, Yi Zhao, Amanda B Kuzma, Elisabeth E. Mlynarski, Yuk Yee Leung, Christopher D. Brown, Li‐San Wang, Gerard D. Schellenberg

The paper identifies enhancer dysregulation and target genes for noncoding Alzheimer's disease-associated variants using GWAS and eQTL data.

Journal of Alzheimer s Disease · Sep 24, 2019Peer-reviewedBioinformatics