Author

John Buswell

New England Biolabs (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Organism:E. coli· 1 Organism:human· 1 Assay:long-read sequencing· 1 Organism:mouse· 1 Assay:multiome· 1

Frequent Co-Authors

Ira SchildkrautiD· 3 shared George TzertzinisiD· 2 shared Ivan Reis Correa JunioriD· 2 shared Madalee G. WulfiD· 2 shared Erbay YigitiD· 1 shared Evan R. Martin· 1 shared Hugh E. OlseniD· 1 shared Joseph M. WhippleiD· 1 shared

Activity by Year

2016-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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3 shared papersGenomics

Ira SchildkrautORCID

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3 papers

Recent·Most cited

Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing

Logan Mulroney, Madalee G. Wulf, Ira Schildkraut, George Tzertzinis, John Buswell, Miten Jain, Hugh E. Olsen, Mark Diekhans, Ivan Reis Correa Junior, Mark A. Akeson, Laurence M. Ettwiller

The paper identifies high-confidence full-length human RNA isoform scaffolds using nanopore sequencing by improving 5' cap detection and 3' polyadenylation site identification.

RNA · Nov 2, 2021Peer-reviewedGenomics

In vitro characterization of the yeast DcpS, a scavenger mRNA decapping enzyme

Madalee G. Wulf, John Buswell, Siu‐Hong Chan, Nan Dai, Katherine Marks, Evan R. Martin, George Tzertzinis, Joseph M. Whipple, Ivan Reis Correa Junior, Ira Schildkraut

This study characterizes the yeast DcpS enzyme's ability to decap long RNA transcripts and validates its use for enriching capped RNA through a tagging strategy.

Scientific Reports · Jun 13, 2019Peer-reviewedMolecular Biology

A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome

Laurence Ettwiller, John Buswell, Erbay Yigit, Ira Schildkraut

The paper introduces Cappable-seq, a method that identifies transcription start sites at single base resolution in E. coli and a mouse gut microbiome.

BMC Genomics · Mar 8, 2016Peer-reviewedGenomics