Author

Josh D. Larkin

Allen Institute for Brain Science

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Neuroscience· 5

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Organism:mouse· 5 Approach:statistical model· 5 Assay:electronic health records· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Assay:imaging· 1

Frequent Co-Authors

Jérôme A. LecoqiD· 5 shared Shiella CaldejoniD· 5 shared Eric LeeiD· 4 shared Saskia E. J. de VriesiD· 4 shared Thuyanh V. NguyeniD· 4 shared Ali WillifordiD· 3 shared India Kato· 3 shared Jennifer Luviano· 3 shared

Activity by Year

2019-2023 · peak 3/yr

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10 top collaborators · 45 mutual co-author links

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5 shared papersNeuroscience

Jérôme A. LecoqORCID

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5 papers

Recent·Most cited

Differential encoding of temporal context and expectation under representational drift across hierarchically connected areas

David G Wyrick, Nicholas Cain, Rylan S. Larsen, Jérôme A. Lecoq, Matthew T. Valley, Ruweida Ahmed, Jessica Bowlus, Gabriella Boyer, Shiella Caldejon, Linzy Casal, Maggie M. Chvilicek, Maxwell Departee, Peter A. Groblewski, Cindy Tzu-Ling Huang, Katelyn Johnson, , Luca Mazzucato

The paper shows that visual areas differentially encode temporal context and expectation in natural scenes, with representational drift observed in lower areas but not higher ones.

bioRxiv · Jun 2, 2023 · PreprintNeuroscience

A standardized non-visual behavioral event is broadcasted homogeneously across cortical visual areas without modulating visual responses

Mahdi Ramadan, Eric Lee, Saskia E. J. de Vries, Shiella Caldejon, India Kato, Kate Roll, Fiona Griffin, Thuyanh V. Nguyen, Josh D. Larkin, Paul Rhoads, Kyla D. Mace, Ali Kriedberg, Robert Howard, Nathan Berbesque, Jérôme A. Lecoq

The paper investigates how a standardized non-visual motor behavior is represented in visual cortex areas and finds it elicits consistent neural responses independent of visual processing.

eNeuro · Sep 1, 2022Peer-reviewedNeuroscience

A large-scale, standardized physiological survey reveals higher order coding throughout the mouse visual cortex

Saskia E. J. de Vries, Jérôme A. Lecoq, Michael A. Buice, Peter A. Groblewski, Gabriel Koch Ocker, Michael Oliver, David H. Feng, Nicholas Cain, Peter Ledochowitsch, Daniel J. Millman, Kate Roll, Marina Garrett, Tom Keenan, Leonard Kuan, Ştefan Mihalaş, , Christof Koch A

The paper presents a large-scale dataset of neural activity in the mouse visual cortex and shows that responses to different stimuli are largely independent, suggesting multi-layer hierarchical computation.

Nature Neuroscience · Dec 16, 2019Peer-reviewedNeuroscience

VIP interneurons selectively enhance weak but behaviorally-relevant stimuli.

Daniel J. Millman, Gabriel Koch Ocker, Shiella Caldejon, India Kato, Josh D. Larkin, Eric Lee, Jennifer Luviano, Chelsea Nayan, Thuyanh V. Nguyen, Kat North, Sam Seid, Cassandra White, Jérôme A. Lecoq, R. Clay Reid, Michael A. Buice, Saskia E. J. de Vries

The paper shows VIP interneurons in mouse visual cortex have complementary contrast tuning to SST neurons and synergistically respond to visual motion and locomotion, enhancing behaviorally-relevant stimuli while maintaining network stability.

bioRxiv · Nov 29, 2019 · PreprintNeuroscience

Widespread presence of direction-reversing neurons in the mouse visual system

Yazan N. Billeh, Ramakrishnan Iyer, Iman A. Wahle, Shiella Caldejon, Séverine Durand, Peter A. Groblewski, Josh D. Larkin, Jérôme A. Lecoq, Ali Williford, Ştefan Mihalaş, Anton S. Arkhipov, Saskia E. J. de Vries

The paper identifies direction-reversing neurons in the mouse visual system that change their preferred motion direction under different spatiotemporal stimuli, supported by an asymmetric filter model.

bioRxiv · Oct 31, 2019 · PreprintNeuroscience