Author

Joshua R. Hansen

Pacific Northwest National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Organism:rat· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Andrea Lynn HeveneriD· 2 shared Anna A. Ivanova· 2 shared Archana Natarajan RajaiD· 2 shared Bret H. GoodpasteriD· 2 shared Bryan C. BergmaniD· 2 shared Charles BurantiD· 2 shared Charles R. EvansiD· 2 shared Chia-Jui HungiD· 2 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Andrea Lynn HevenerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Multi-omic identification of key transcriptional regulatory programs during endurance exercise training in rats

Gregory R. Smith, Bingqing Zhao, Maléne E. Lindholm, Archana Natarajan Raja, Mark R. Viggars, Hanna Pinças, Nicole R. Gay, Yifei Sun, Sindhu Vangeti, Yongchao Ge, Venugopalan D. Nair, James A. Sanford, Mary Anne S. Amper, Mital Vasoya, Kevin S. Smith, , Ian R. Lanza

The paper identifies tissue-specific transcriptional regulatory programs in rats undergoing endurance exercise training by integrating chromatin accessibility, DNA methylation, and gene expression data.

Nature Communications · Mar 21, 2026Peer-reviewedGenomics

Sexual dimorphism and the multi-omic response to exercise training in rat subcutaneous white adipose tissue

Gina M. Many, James A. Sanford, Tyler J. Sagendorf, Zhenxin Hou, Pasquale Nigro, Katie L. Whytock, David Amar, Tiziana Caputo, Nicole R. Gay, David A. Gaul, Michael F. Hirshman, David Jimenez‐Morales, Maléne E. Lindholm, Michael J. Muehlbauer, Maria T. Vamvini, , Russell P. Tracy

This study examines how endurance exercise training affects rat subcutaneous white adipose tissue, revealing sex-specific molecular responses and differences in adiposity and metabolism.

Nature Metabolism · May 1, 2024Peer-reviewedMolecular Biology

Lactobacillus acidophilus disrupts collaborative multispecies bile acid metabolism

Sydney Dautel, Nymul Khan, Kristoffer R. Brandvold, Colin J. Brislawn, Janine Hutchison, Karl K. Weitz, Heino M. Heyman, Hyun-Seob Song, Zehra Esra Ilhan, Eric A. Hill, Joshua R. Hansen, Xueyun Zheng, Erin S. Baker, John R. Cort, Young-Mo Kim, , Hans C. Bernstein

This study investigates how Lactobacillus acidophilus affects microbial interactions in bile acid metabolism, revealing it inhibits the production of ursocholate, which correlates with weight loss after gastric bypass.

bioRxiv · Apr 11, 2018 · PreprintMicrobiology