Author

Matin Bikaran

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:CRISPR screen· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:perturbation response prediction· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Chun YeiD· 2 shared Alexander MarsoniD· 1 shared Alison M. DevaultiD· 1 shared Ann G. CarmichaeliD· 1 shared Anne Dumaine· 1 shared Byungjin HwangiD· 1 shared Christian E. DemeureiD· 1 shared Derek Elli· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersGenomics

Chun YeORCID

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2 papers

Recent·Most cited

A genome-wide CRISPR activation map of surface protein expression in human CD4 T cells

Yutong V Wang, Junha Park, Min Cheol Kim, Thomas Mazumder, Krishna Sonpal, Matin Bikaran, Zachary Steinhart, Ralf L. J. Schmidt, Yang Sun, Su-Hyeon Lee, Alexander Marson, Chun Ye, Byungjin Hwang

This paper introduces SCITO-Perturb-seq, a CRISPRa platform that maps surface protein regulation in CD4 T cells, finding 16% of activated genes alter surface protein expression.

bioRxiv · Aug 11, 2026 · PreprintGenomics

Reply to Barton et al: signatures of natural selection during the Black Death

Tauras P. Vilgalys, Jennifer Klunk, Christian E. Demeure, Xiaoheng Cheng, Mari Shiratori, Julien Madej, Rémi Beau, Derek Elli, Maria I. Patino, Rebecca C. Redfern, Sharon N. DeWitte, Julia A. Gamble, Jesper L. Boldsen, Ann G. Carmichael, Nükhet Varlık, , Luis Bruno Barreiro

The paper addresses statistical concerns about detecting natural selection during the Black Death using ancient genomic data, reaffirming findings related to immune loci and the ERAP2 variant.

bioRxiv · Apr 6, 2023 · PreprintGenomics