Author

Micha Muller

University Medical Center Utrecht

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:imaging· 1 Approach:machine learning (classical)· 1 Research Focus:protein design· 1

Frequent Co-Authors

Marvin E. TanenbaumiD· 2 shared Bernhard A. KrameriD· 1 shared Bram M P Verhagen· 1 shared Carlos AlvaradoiD· 1 shared Carlota Davó-MartíneziD· 1 shared David LiedtkeiD· 1 shared Eivind ValeniD· 1 shared Geert J.P.L. KopsiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersCell Biology

Marvin E. TanenbaumORCID

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Author profile →

2 papers

Recent·Most cited

Linking live-cell imaging to single-cell sequencing using genetic barcoding

Micha Muller, Silke J. A. Lochs, Leonie Apperloo, Rupa Banerjee, Joana R. Fernandes Marques, Carlota Davó-Martínez, Pim M. J. Rullens, Marta Moreno‐Gonzalez, Vasilis Papageorgiou, Bernhard A. Kramer, Geert J.P.L. Kops, Jop Kind, Marvin E. Tanenbaum

This paper introduces Waldo, a genetic barcoding system that links live-cell imaging phenotypes to single-cell sequencing data for the same cells.

bioRxiv · Oct 8, 2026 · PreprintCell Biology

Decoding the Sequence Requirements for Translation Initiation

Bram M P Verhagen, David Liedtke, Lucía Barbadilla-Martínez, Carlos Alvarado, Valentyn Petrychenko, Michał I. Świrski, Micha Muller, Eivind Valen, Joseph Daniel Puglisi, Jeroen de Ridder, Niels Fischer, Marvin E. Tanenbaum

The paper defines an extended translation initiation sequence (eTIS) and shows that a deep-learning model trained on eTIS features accurately predicts translation initiation, revealing that the Kozak sequence is not optimal and identifying conserved nucleotides that enhance initiation efficiency.

bioRxiv · May 12, 2026 · PreprintMolecular Biology