Author

Negar Makhsous

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 2 Research Focus:software / tool· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexander L. GreningeriD· 4 shared Meei-Li W. HuangiD· 2 shared Michelle J. LiniD· 2 shared Ryan C. SheaniD· 2 shared Amanda L. AdleriD· 1 shared Amanda M. CastoiD· 1 shared Danielle M. ZerriD· 1 shared David M. KoelleiD· 1 shared

Activity by Year

2018-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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4 shared papersBioinformatics

Alexander L. GreningerORCID

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Author profile →

4 papers

Recent·Most cited

LAVA: a streamlined visualization tool for longitudinal analysis of viral alleles

Michelle J. Lin, Ryan C. Shean, Negar Makhsous, Alexander L. Greninger

LAVA is a command-line tool for visualizing longitudinal viral genome evolution, generating interactive HTML results for analysis and sharing.

bioRxiv · Dec 17, 2019 · PreprintBioinformatics

VAPiD: a lightweight cross platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank

Ryan C. Shean, Negar Makhsous, Graham D. Stoddard, Michelle J. Lin, Alexander L. Greninger

VAPiD annotates and submits viral genomes to NCBI GenBank, supporting multiple virus types and operating across platforms.

BMC Bioinformatics · Jan 23, 2019Peer-reviewedBioinformatics

Prospective real-time metagenomic sequencing during norovirus outbreak reveals discrete transmission clusters

Amanda M. Casto, Amanda L. Adler, Negar Makhsous, Kristen Crawford, Xuan Guang Qin, Jane M. Kuypers, Meei-Li W. Huang, Danielle M. Zerr, Alexander L. Greninger

This study uses real-time metagenomic sequencing during a norovirus outbreak to identify transmission clusters and ongoing viral shedding in a hospital setting.

Clinical Infectious Diseases · Nov 29, 2018Peer-reviewedGenomics

Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains

Alexander L. Greninger, Pavitra Roychoudhury, Negar Makhsous, Derek J. Hanson, Jill Chase, G. R. F. Krueger, Hong Jian Xie, Meei-Li W. Huang, Lindsay M. Saunders, Dharam V. Ablashi, David M. Koelle, Linda Cook, Keith R. Jerome

The paper uses next-generation sequencing to analyze copy number variations and interspecies recombination in HHV-6A and HHV-6B reference strains, revealing large tandem repeats and a novel recombinant strain.

Journal of Virology · Feb 27, 2018Peer-reviewedGenomics