Author

Rebecca Stanton

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Research Focus:database / resource· 2 Research Focus:differential expression· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Balaji SundararamaniD· 3 shared Brenton R. GraveleyiD· 2 shared Brian A. YeeiD· 2 shared Chelsea Anne Gelboin-Burkhart· 2 shared Eric L. Van NostrandiD· 2 shared Gene Wei-Ming YeoiD· 2 shared Ines RabanoiD· 2 shared Keri E. Garcia· 2 shared

Activity by Year

2016-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Balaji SundararamanORCID

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3 papers

Recent·Most cited

A Large-Scale Binding and Functional Map of Human RNA Binding Proteins

Eric L. Van Nostrand, Peter Freese, Henry Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M. Blue, Jiayu Chen, Neal A. L. Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra A Bazile, Louis Philip Benoit Bouvrette, , Gene Wei-Ming Yeo

The paper maps and characterizes RNA elements recognized by human RNA binding proteins in K562 and HepG2 cells, expanding the catalog of functional elements in the human genome.

Nature · Jul 29, 2020Peer-reviewedGenomics

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.

Eric L. Van Nostrand, Gabriel A. Pratt, Brian A. Yee, Emily C. Wheeler, Steven M. Blue, Jasmine R. Mueller, Samuel S. Park, Keri E. Garcia, Chelsea Anne Gelboin-Burkhart, Thai B. Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang‐Dong Fu, , Gene Wei-Ming Yeo

The paper analyzes eCLIP data for 150 RBPs in K562 and HepG2 cells, revealing binding modalities, RBP functions, and novel RNA processing mechanisms.

Genome biology · Apr 6, 2020Peer-reviewedGenomics

Resources for the comprehensive discovery of functional RNA elements

Balaji Sundararaman, Lijun Zhan, Steven Blue, Rebecca Stanton, Keri Elkins, Sara Olson, Xintao Wei, Eric L Van Nostrand, Stephanie C Huelga, Brendan M Smalec, Xiaofeng Wang, Eurie L Hong, Jean M Davidson, Eric Lecuyer, Brenton R Graveley, Gene W Yeo

The paper develops a validated repository of 438 antibodies against 365 RBPs and confirms their specificity using shRNA constructs, providing resources for studying RBP functions.

Molecular Cell · Mar 1, 2016Peer-reviewedGenomics