Author

Rutger Verbakel

Novo Nordisk Foundation

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Synthetic Biology· 2

Signature Assays, Organisms & Methods

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Organism:E. coli· 2 Approach:experimental assay· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Enrico OrsiiD· 2 shared Pablo I. NikeliD· 2 shared Steffen N. LindneriD· 2 shared Εlad NooriD· 2 shared Alberto De MariaiD· 1 shared Andreas M. KüffneriD· 1 shared Ari SatanowskiiD· 1 shared Arren Bar‐EveniD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersSynthetic Biology

Enrico OrsiORCID

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2 papers

Recent·Most cited

A microbial growth-coupled platform for in vivo interrogation of Rubisco oxygenase activity

Enrico Orsi, Kai Kabuth, Simone Cusimano, Mathias Herløv-Wagner, Rutger Verbakel, Francesco Luppino, Michele Partipilo, Benoit de Pins, Εlad Noor, Lena M Hümmler, Michael Mülleder, Steffen N. Lindner, Markus Ralser, Pablo I. Nikel

This paper develops a microbial platform to study Rubisco oxygenase activity in vivo by linking it to bacterial growth, enabling genetic screening and evolution of enzyme variants.

bioRxiv · Jul 10, 2026 · PreprintSynthetic Biology

Expanding the biotechnological scope of metabolic sensors through computation-aided designs

Enrico Orsi, Helena Schulz-Mirbach, Charles A. R. Cotton, Ari Satanowski, Henrik M. Petri, Susanne L. Arnold, Natalia Grabarczyk, Rutger Verbakel, Karsten S. Jensen, Stefano Donati, Nicole Paczia, Timo Glatter, Andreas M. Küffner, Tanguy Chotel, Farah Schillmüller, , Pablo I. Nikel

This paper presents a computational workflow for designing and testing E. coli metabolic sensors that detect glyoxylate and glycolate across a wide concentration range, with applications in bioengineering and environmental monitoring.

bioRxiv · Aug 23, 2024 · PreprintSynthetic Biology