Author

K. Kitagawa

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Cancer Biology· 1 Evolutionary Biology· 1 Zoology· 1

Signature Assays, Organisms & Methods

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Organism:human· 5 Approach:experimental assay· 3 Research Focus:host-pathogen & immune response· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

S. Iwami· 4 shared K. Watashi· 3 shared A. S. Perelson· 2 shared K. Aihara· 2 shared K. S. Kim· 2 shared L. Allweiss· 2 shared M. Dandri· 2 shared M. Iwamoto· 2 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

4 shared papersMicrobiology

S. Iwami

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

The first European woolly rhinoceros mitogenomes retrieved from within cave hyena coprolites suggest long-lasting phylogeographic differentiation

P. A. Seeber, Z. Palmer, A. Schmidt, A. Chagas, K. Kitagawa, E. Marinova-Wolff, Y. Tafelmaier, L. Epp

The paper retrieves the first European woolly rhinoceros mitogenomes from cave hyena coprolites, showing genetic distinction from Siberian populations and suggesting a population split.

bioRxiv · Jun 23, 2023 · PreprintZoology

Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation for analyzing extracellular viral markers

K. Kitagawa, K. Kim, M. Iwamoto, S. Hayashi, H. Park, T. Nishiyama, N. Nakamura, Y. Fujita, S. Nakaoka, K. Aihara, A. S. Perelson, L. Allweiss, M. Dandri, K. Watashi, Y. Tanaka, S. Iwami

This study develops a multiscale mathematical model to predict intrahepatic cccDNA dynamics using serum viral markers, offering a non-invasive method for HBV infection analysis.

bioRxiv · Jun 6, 2023 · PreprintMicrobiology

Prediction of elimination of intrahepatic cccDNA in hepatitis B virus-infected patients by a combination of noninvasive viral markers

S. Iwami, M. Iwamoto, T. Wakita, K. Watashi, A. S. Perelson, Y. Tanaka, M. Dandri, K. Aihara, M. Muramatsu, S. Iwami, E. Kawakami, L. Allweiss, P. Tangkijvanich, N. Chuaypen, M. Atsukawa, , Y. Fujita

This study develops a noninvasive method using viral markers to predict cccDNA levels in HBV patients, validated against liver biopsy data.

bioRxiv · Nov 4, 2022 · PreprintMicrobiology

A widely-distributed HIV-1 provirus elimination assay to evaluate latency-reversing agents in vitro

K. Matsuda, S. Islam, T. Takada, K. Tsuchiya, B. J. Y. Tan, S.-i. Hattori, H. Katsuya, K. Kitagawa, K. S. Kim, M. Matsuo, N. S. Delino, H. Gatanaga, K. Yoshimura, S. Matsushita, H. Mitsuya, , K. Maeda

The paper develops a new assay to evaluate latency-reversing agents by eliminating HIV-1 proviruses in a long-term cell culture system.

Cell Reports Methods · Dec 1, 2021Peer-reviewedMicrobiology

Two strategies underlying the trade-off of hepatitis C virus proliferation: stay-at-home or leaving-home?

S. Iwanami, K. Kitagawa, Y. Asai, H. Ohashi, K. Nishioka, H. Inaba, S. Nakaoka, T. Wakita, O. Diekmann, S. Iwami, K. Watashi

This study analyzes the trade-off between two HCV proliferation strategies, finding that Jc1-n favors transmission while JFH-1 favors intracellular replication.

bioRxiv · Oct 28, 2019Evolutionary Biology

Single-cell RNA Profiling Identifies Diverse Cellular Responses to EWSR1-FLI1 Down-regulation in Ewing Sarcoma

R. Khoogar, E. Lawlor, M. S. Ignatius, C. Yidong, K. Kitagawa, T. Huang, P. J. Houghton

The paper uses single-cell RNA sequencing to identify distinct cellular responses to EWSR1-FLI1 down-regulation in Ewing sarcoma, revealing dormancy and stem-like features associated with drug resistance.

bioRxiv · Aug 30, 2019 · PreprintCancer Biology